Result of FASTA (omim) for
pF1KB8945
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8945, 304 aa
1>>>pF1KB8945 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5752+/-0.000334; mu= 8.1677+/- 0.021
mean_var=242.0812+/-49.791, 0's: 0 Z-trim(123.3): 223 B-trim: 0 in 0/55
Lambda= 0.082432
statistics sampled from 42477 (42771) to 42477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.501), width: 16
Scan time: 6.690
The best scores are: opt bits E(85289)
NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapie ( 304) 2111 263.3 4.5e-70
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 516 73.5 5.2e-13
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 324 50.7 3.9e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 324 50.7 3.9e-06
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 313 49.3 9.3e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 310 49.1 1.4e-05
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 303 48.4 2.7e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 301 48.2 3.5e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 301 48.2 3.5e-05
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 293 46.9 4.8e-05
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 291 46.8 6.1e-05
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 290 46.7 7.2e-05
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 287 46.3 8.3e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 286 46.2 9.6e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 286 46.3 0.00011
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 286 46.3 0.00011
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 286 46.4 0.00012
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 286 46.4 0.00012
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 286 46.4 0.00012
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 286 46.4 0.00012
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 286 46.4 0.00012
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 286 46.4 0.00012
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 286 46.4 0.00012
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 286 46.5 0.00013
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 286 46.6 0.00014
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 279 45.3 0.00015
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 280 45.5 0.00016
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 277 45.1 0.00019
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 279 45.5 0.00019
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 277 45.3 0.00026
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 277 45.3 0.00026
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 277 45.3 0.00026
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 277 45.3 0.00026
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 277 45.3 0.00026
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 277 45.3 0.00026
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 277 45.3 0.00026
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 273 44.7 0.00028
>>NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapiens] (304 aa)
initn: 2111 init1: 2111 opt: 2111 Z-score: 1379.1 bits: 263.3 E(85289): 4.5e-70
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)
10 20 30 40 50 60
pF1KB8 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_573 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_573 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_573 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_573 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_573 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE
250 260 270 280 290 300
pF1KB8 ISPL
::::
NP_573 ISPL
>>NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapiens] (264 aa)
initn: 649 init1: 415 opt: 516 Z-score: 354.6 bits: 73.5 E(85289): 5.2e-13
Smith-Waterman score: 725; 45.0% identity (64.8% similar) in 318 aa overlap (1-302:1-261)
10 20 30 40 50
pF1KB8 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC
: ::: ::::....... :: : : : : ..::: .. .:: : .::.: .:
NP_663 MPRSFLVDSLVLREAGEKKA--PEGSPPPLF--PYAVPPPHALHGLSPGACHARKAGLLC
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF
::::::: :.::. : ::::::..: : .:.
NP_663 VCPLCVTASQLHGPPGP------------------------PALPLLKASFP--PFGSQY
60 70 80 90
120 130 140 150 160 170
pF1KB8 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY
: : : .. :. .:: .: . ::::::::: . :.:
NP_663 C----------HAPLGRQ--HSAVSPG----VAHGPAAAAAAAALYQ----------TSY
100 110 120
180 190 200 210 220 230
pF1KB8 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY
. :::.:::... .: ..:.:..:::::::::::::::::::.::::::::::::::::
NP_663 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY
130 140 150 160 170 180
240 250 260 270 280
pF1KB8 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE
:::::::::::::::::::::::::... .. ::::.. :... ....
NP_663 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD
190 200 210 220 230 240
290 300
pF1KB8 DEDSLSPASAN-DDKEISPL
:: .::.:.. ::....
NP_663 DELPMSPSSSGKDDRDLTVTP
250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 363 init1: 248 opt: 324 Z-score: 231.2 bits: 50.7 E(85289): 3.9e-06
Smith-Waterman score: 324; 42.1% identity (63.6% similar) in 140 aa overlap (129-262:81-216)
100 110 120 130 140 150
pF1KB8 AGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQ----PGSAAAAAAAA
: : : ::: . .: :. ..:.:.
NP_705 ELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB8 AAAAAAAALGHPQHHAPVCTATTYNVADP--RRFHCLTMGGSDASQVPNGKRMRTAFTST
. : : . :.: : .:. .. : ...: :.. . . : :: :::.:
NP_705 SPAPPACSQPAPDH--PSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP--KRSRTAYTRQ
120 130 140 150 160
220 230 240 250 260 270
pF1KB8 QLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGC
:.::::.:: : ::.: :::::: : :::.:.::::::::.: ::. .
NP_705 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP
170 180 190 200 210 220
280 290 300
pF1KB8 KCVGSQVHYARSEDEDSLSPASANDDKEISPL
NP_705 PAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 363 init1: 248 opt: 324 Z-score: 231.2 bits: 50.7 E(85289): 3.9e-06
Smith-Waterman score: 324; 42.1% identity (63.6% similar) in 140 aa overlap (129-262:81-216)
100 110 120 130 140 150
pF1KB8 AGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQ----PGSAAAAAAAA
: : : ::: . .: :. ..:.:.
NP_055 ELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB8 AAAAAAAALGHPQHHAPVCTATTYNVADP--RRFHCLTMGGSDASQVPNGKRMRTAFTST
. : : . :.: : .:. .. : ...: :.. . . : :: :::.:
NP_055 SPAPPACSQPAPDH--PSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP--KRSRTAYTRQ
120 130 140 150 160
220 230 240 250 260 270
pF1KB8 QLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGC
:.::::.:: : ::.: :::::: : :::.:.::::::::.: ::. .
NP_055 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAP
170 180 190 200 210 220
280 290 300
pF1KB8 KCVGSQVHYARSEDEDSLSPASANDDKEISPL
NP_055 PAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 299 init1: 250 opt: 313 Z-score: 224.3 bits: 49.3 E(85289): 9.3e-06
Smith-Waterman score: 313; 35.5% identity (55.6% similar) in 214 aa overlap (77-277:26-234)
50 60 70 80 90 100
pF1KB8 GPGCPSRKSGAFCVCPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGAL---P
:. : :: :.:..:. .: :
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRP
10 20 30 40 50
110 120 130 140 150 160
pF1KB8 LLKSQ-FS-SAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAA
. : :. :.:: .. : .:... : :. : .: : : : .: :
NP_055 DFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHY---AAPGEPCPAPPAPPPAPLPGARA
60 70 80 90 100 110
170 180 190 200 210
pF1KB8 ALGHPQHHAPVCTATTY-NVADP--RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELE
.. : :: :. : .. : ... . .. : :: :::.: :.::::
NP_055 YSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEP--KRSRTAYTRQQVLELE
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB8 REFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK-----GTQRNSHAGCK
.:: : ::.: :::::: : :::.:.::::::::.: ::. : : . .: .. .
NP_055 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSS
180 190 200 210 220 230
280 290 300
pF1KB8 CVGSQVHYARSEDEDSLSPASANDDKEISPL
: .:
NP_055 CSSSVAPSQHLQPMAKDHHTDLTTL
240 250
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 318 init1: 251 opt: 310 Z-score: 221.3 bits: 49.1 E(85289): 1.4e-05
Smith-Waterman score: 310; 32.7% identity (52.5% similar) in 263 aa overlap (25-276:36-292)
10 20 30 40 50
pF1KB8 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRK
: :: . : :: . .. : :
NP_002 FLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQP-PAPPTQHLPLQQPQLPHAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SGAFCVCPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPG
.: . . . ..: . ::. : : : : :: : : . :.
NP_002 GGREPTASYYAPRTAREPAYPAAALYPAHGAADT-AYPYGYRG--GASPGRPPQPEQPPA
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 DAQFCPRVNHAHH---HHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHP---QH
.:. . :: : . :: . . : : :: :. .. :...: . :
NP_002 QAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLAD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 HAPVCTATTYNVADP--RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMY
..:. :. : ...: ... : . : :: :::.: :.::::.:: : :
NP_002 KSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEP--KRSRTAYTRQQVLELEKEFHFNRY
190 200 210 220 230
230 240 250 260 270 280
pF1KB8 LSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK--GTQ-RNSHAGCKCVGSQVHYAR
:.: :::::: : :::.::::::::::.: ::. : .:. :.:... .:
NP_002 LTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQT
240 250 260 270 280 290
290 300
pF1KB8 SEDEDSLSPASANDDKEISPL
NP_002 QSPHLHPHPHPSTSTPVPSSI
300 310 320
>>NP_006726 (OMIM: 604685,612290) homeobox protein Hox-A (376 aa)
initn: 451 init1: 260 opt: 303 Z-score: 216.0 bits: 48.4 E(85289): 2.7e-05
Smith-Waterman score: 331; 39.6% identity (65.9% similar) in 164 aa overlap (130-290:91-232)
100 110 120 130 140 150
pF1KB8 GALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAA
.::.. . .. .. .: ::::::.
NP_006 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPW--MKEKKAAKKTALLPAAAAAAT
70 80 90 100 110
160 170 180 190 200 210
pF1KB8 AAALGHPQHHAPVCTA--TTYNVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLEL
::: : :.: . . ..:: . ::: .:.:::.:.::::::
NP_006 AAATG------PACLSHKESLEIADG------SGGGS--------RRLRTAYTNTQLLEL
120 130 140 150
220 230 240 250 260 270
pF1KB8 EREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ-RNSHAGCKCVG
:.:: : :: : ::.:::. :.:.:.:::.::::::.:::.. . . .::.. :: .
NP_006 EKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLE
160 170 180 190 200 210
280 290 300
pF1KB8 SQVHYARSEDEDSLSPASANDDKEISPL
.. . ..:.: .:
NP_006 DSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLT
220 230 240 250 260 270
>>XP_006712540 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 319 init1: 266 opt: 301 Z-score: 214.0 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 309; 32.6% identity (55.2% similar) in 230 aa overlap (38-262:51-254)
10 20 30 40 50 60
pF1KB8 DSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCVCPLCVTS
::: . : :. . :: . .
XP_006 AYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPA
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB8 HLHSSRGSVGAGSGG-AGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAH
: .:. :: :.: . .::.: . : :.:. .. : : .
XP_006 H----KGAELNGSCMRPGTGNSQGGGGG-----SQPPGLNSE-QQPPQPPPPPPTL----
90 100 110 120
130 140 150 160 170 180
pF1KB8 HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHA-PVCTATTYNVADPRR
::. .: .::... : .. :... . ... : . : . ..
XP_006 ----PPS------SPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQN--SKQK
130 140 150 160 170
190 200 210 220 230 240
pF1KB8 FHCLTMGGSDASQVPNG---KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS
: : : : .. : : ::.:::.::.::.:::.:: : :: : ::.:.:. :::.
XP_006 NSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 EKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKEIS
:.:.::::::::.:.::. :
XP_006 ERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAY
240 250 260 270 280 290
>>XP_005246567 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 319 init1: 266 opt: 301 Z-score: 214.0 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 309; 32.6% identity (55.2% similar) in 230 aa overlap (38-262:51-254)
10 20 30 40 50 60
pF1KB8 DSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCVCPLCVTS
::: . : :. . :: . .
XP_005 AYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPA
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB8 HLHSSRGSVGAGSGG-AGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAH
: .:. :: :.: . .::.: . : :.:. .. : : .
XP_005 H----KGAELNGSCMRPGTGNSQGGGGG-----SQPPGLNSE-QQPPQPPPPPPTL----
90 100 110 120
130 140 150 160 170 180
pF1KB8 HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHA-PVCTATTYNVADPRR
::. .: .::... : .. :... . ... : . : . ..
XP_005 ----PPS------SPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQN--SKQK
130 140 150 160 170
190 200 210 220 230 240
pF1KB8 FHCLTMGGSDASQVPNG---KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS
: : : : .. : : ::.:::.::.::.:::.:: : :: : ::.:.:. :::.
XP_005 NSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 EKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKEIS
:.:.::::::::.:.::. :
XP_005 ERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAY
240 250 260 270 280 290
>>XP_005246566 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 319 init1: 266 opt: 301 Z-score: 214.0 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 309; 32.6% identity (55.2% similar) in 230 aa overlap (38-262:51-254)
10 20 30 40 50 60
pF1KB8 DSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCVCPLCVTS
::: . : :. . :: . .
XP_005 AYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPA
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB8 HLHSSRGSVGAGSGG-AGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAH
: .:. :: :.: . .::.: . : :.:. .. : : .
XP_005 H----KGAELNGSCMRPGTGNSQGGGGG-----SQPPGLNSE-QQPPQPPPPPPTL----
90 100 110 120
130 140 150 160 170 180
pF1KB8 HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHA-PVCTATTYNVADPRR
::. .: .::... : .. :... . ... : . : . ..
XP_005 ----PPS------SPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQN--SKQK
130 140 150 160 170
190 200 210 220 230 240
pF1KB8 FHCLTMGGSDASQVPNG---KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS
: : : : .. : : ::.:::.::.::.:::.:: : :: : ::.:.:. :::.
XP_005 NSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 EKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKEIS
:.:.::::::::.:.::. :
XP_005 ERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAY
240 250 260 270 280 290
304 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:36:53 2016 done: Fri Nov 4 16:36:54 2016
Total Scan time: 6.690 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]