FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8945, 304 aa
  1>>>pF1KB8945 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3569+/-0.000822; mu= 9.5948+/- 0.050
 mean_var=231.8799+/-48.456, 0's: 0 Z-trim(116.0): 157  B-trim: 113 in 1/52
 Lambda= 0.084225
 statistics sampled from 16366 (16542) to 16366 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.508), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS3494.1 GSX2 gene_id:170825|Hs108|chr4          ( 304) 2106 267.9 6.7e-72
CCDS9326.1 GSX1 gene_id:219409|Hs108|chr13         ( 264)  516 74.7 8.8e-14


>>CCDS3494.1 GSX2 gene_id:170825|Hs108|chr4               (304 aa)
 initn: 2106 init1: 2106 opt: 2106  Z-score: 1404.4  bits: 267.9 E(32554): 6.7e-72
Smith-Waterman score: 2106; 99.7% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB8 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS34 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKGQFSSAPGDAQFCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE
              250       260       270       280       290       300

           
pF1KB8 ISPL
       ::::
CCDS34 ISPL
           

>>CCDS9326.1 GSX1 gene_id:219409|Hs108|chr13              (264 aa)
 initn: 649 init1: 415 opt: 516  Z-score: 360.9  bits: 74.7 E(32554): 8.8e-14
Smith-Waterman score: 725; 45.0% identity (64.8% similar) in 318 aa overlap (1-302:1-261)

               10        20        30        40         50         
pF1KB8 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC
       : ::: ::::.......     ::  : : :  : ..::: ..   .:: : .::.: .:
CCDS93 MPRSFLVDSLVLREAGEKKA--PEGSPPPLF--PYAVPPPHALHGLSPGACHARKAGLLC
               10        20            30        40        50      

      60         70        80        90       100       110        
pF1KB8 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF
       ::::::: :.::.  :                          ::::::..:   :  .:.
CCDS93 VCPLCVTASQLHGPPGP------------------------PALPLLKASFP--PFGSQY
         60        70                                80          90

      120       130       140       150       160       170        
pF1KB8 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY
       :          : :  ..  :.  .::    .: . ::::::::: .          :.:
CCDS93 C----------HAPLGRQ--HSAVSPG----VAHGPAAAAAAAALYQ----------TSY
                          100           110       120              

      180       190       200       210       220       230        
pF1KB8 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY
        . :::.:::... .: ..:.:..:::::::::::::::::::.::::::::::::::::
CCDS93 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY
          130       140        150       160       170       180   

      240       250       260                   270        280     
pF1KB8 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE
       :::::::::::::::::::::::::...            ..  ::::.. :... ....
CCDS93 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD
           190       200       210       220       230       240   

         290        300     
pF1KB8 DEDSLSPASAN-DDKEISPL 
       ::  .::.:.. ::....   
CCDS93 DELPMSPSSSGKDDRDLTVTP
           250       260    




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:36:52 2016 done: Fri Nov  4 16:36:52 2016
 Total Scan time:  2.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]