Result of FASTA (omim) for
pF1KB8931
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8931, 282 aa
1>>>pF1KB8931 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6669+/-0.000352; mu= 8.0127+/- 0.022
mean_var=273.5076+/-55.501, 0's: 0 Z-trim(123.8): 156 B-trim: 774 in 1/57
Lambda= 0.077551
statistics sampled from 44005 (44200) to 44005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.518), width: 16
Scan time: 7.350
The best scores are: opt bits E(85289)
NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 1988 234.7 1.5e-61
NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 429 60.3 4.6e-09
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 334 49.7 7.8e-06
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 303 46.4 0.0001
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 300 46.1 0.00013
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 299 46.0 0.00014
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 299 46.0 0.00014
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 299 46.0 0.00014
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 299 46.0 0.00014
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 299 46.0 0.00014
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 299 46.0 0.00014
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 296 45.5 0.00016
NP_006352 (OMIM: 604607) homeobox protein Hox-B13 ( 284) 292 45.0 0.00019
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 282 43.8 0.0004
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 283 44.1 0.00044
NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330) 282 44.0 0.00046
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 280 43.7 0.0005
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 279 43.7 0.00061
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 279 43.7 0.00061
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 276 43.2 0.00068
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 280 44.1 0.00075
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 275 43.2 0.00083
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 273 42.9 0.00087
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 273 43.2 0.0012
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 268 42.2 0.0012
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 265 42.0 0.0015
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 262 41.5 0.0018
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 258 41.0 0.0023
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 258 41.1 0.0025
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 261 41.7 0.0027
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 257 41.0 0.0027
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 257 41.0 0.0027
NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 259 41.4 0.0028
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 257 41.3 0.0038
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 257 41.3 0.0038
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 255 41.0 0.0038
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 256 41.2 0.0038
>>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom (282 aa)
initn: 1988 init1: 1988 opt: 1988 Z-score: 1226.2 bits: 234.7 E(85289): 1.5e-61
Smith-Waterman score: 1988; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KB8 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT
190 200 210 220 230 240
250 260 270 280
pF1KB8 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::::::::::::::::::::::::::::::::::::::::
NP_776 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
250 260 270 280
>>NP_067016 (OMIM: 142988) homeobox protein Hox-D12 [Hom (270 aa)
initn: 632 init1: 401 opt: 429 Z-score: 283.7 bits: 60.3 E(85289): 4.6e-09
Smith-Waterman score: 655; 44.6% identity (65.3% similar) in 294 aa overlap (1-282:1-270)
10 20 30 40 50
pF1KB8 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPR-------RDNVCSL
: :..: :.:: :.:... :.::: :.: .:.:: .:: .:::: :.
NP_067 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SWPS-AEPCNGYPQPYL-GS-PVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKRE
. :. : .:. :::: :: :..:.:: : . . :..: : : : .: :
NP_067 AQPAGATAFGGFSQPYLAGSGPLGLQPP---TAKDGPEEQAKFY--APEAAAGP-----E
70 80 90 100 110
120 130 140 150 160
pF1KB8 ERGRD-PGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESD
:::: :. .: ..: : . : ::::: : : :.. . : ....:
NP_067 ERGRTRPSFAPESSLAPAVAALKAA---KYDYA--GVGRATPGSTTLLQGAPCAPGFKDD
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 SSSSL-LNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE
... : :: ..::.. : . : : .: :: .:.:::::::.: :.::
NP_067 TKGPLNLNMTVQAAGVA---SCLRPSLP------DGLPWGAAPGRARKKRKPYTKQQIAE
170 180 190 200 210
230 240 250 260 270 280
pF1KB8 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::.::::::::.::.:.:::.::::::::::::::::::::::..::::::...
NP_067 LENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
220 230 240 250 260 270
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 312 init1: 251 opt: 334 Z-score: 225.7 bits: 49.7 E(85289): 7.8e-06
Smith-Waterman score: 347; 32.6% identity (54.0% similar) in 276 aa overlap (23-272:38-290)
10 20 30 40 50
pF1KB8 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPS--LSYPRRDNV
:.:.:.: . .. :: :: .::: .:
NP_055 GNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQISYPYSAQV
10 20 30 40 50 60
60 70 80 90
pF1KB8 CSLSWPSA--EPC------NGYPQPYLGSPVSLN----PPFGRTCELARVEDGKGYYREP
. : :: :.: . : .. .. :: : : . : . : ...:
NP_055 PPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 CAEGGGGGLKREERGRDPGAGPGAALLPLEPSG--PPALGFKYDYAAGGGGGDGGGGAGP
: : : :.. .. .. : :. .: : ::: :
NP_055 SA---------------PHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGG-------DP
130 140 150 160
160 170 180 190 200
pF1KB8 PHDPPSCQSL-------ESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWY-
: .:: :.. :. .:.: .... :: : ..: . :.. :.. :
NP_055 PAEPP-CSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB8 --PINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRR
: :.:::: ::::.:. ::: ::. : .:....: .:: :::.:.::::::::::
NP_055 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR
230 240 250 260 270 280
270 280
pF1KB8 MKKKRLLLREQALSFF
::.:.:
NP_055 MKEKKLSRDRLQYFSGNPLL
290 300
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 324 init1: 243 opt: 303 Z-score: 205.6 bits: 46.4 E(85289): 0.0001
Smith-Waterman score: 322; 34.1% identity (52.9% similar) in 261 aa overlap (27-272:179-394)
10 20 30 40 50
pF1KB8 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWP
:. :..:.: .: : . :.:.
NP_061 QPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPP---DGCALGTS
150 160 170 180 190 200
60 70 80 90 100 110
pF1KB8 SAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDP
:. : :: :. .: . ::: . ::::. .
NP_061 SGVPVPGY--------FRLSQAYGTA---------KGY-----GSGGGGAQQL-------
210 220 230
120 130 140 150 160
pF1KB8 GAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGA----GPPHDPPS--CQS-----
:::: :. ::. :: : ..:..:.. .:: ::. : :
NP_061 GAGP-------FPAQPPGRGFDLPPALASGSADAARKERALDSPP--PPTLACGSGGGSQ
240 250 260 270 280
170 180 190 200 210 220
pF1KB8 --LESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSA--SGAPWYPINSRSRKKRKPY
:. .::: .: . : . .: .:: . . : : ..: : .: .:::: ::
NP_061 GDEEAHASSSAAEELSP---APSESSKASPEKDSLGNSKGENAANWLTAKS-GRKKRCPY
290 300 310 320 330 340
230 240 250 260 270 280
pF1KB8 SKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSF
.: : ::: ::: : ..::.:: :.: ..:.:.:::::::::::: :..
NP_061 TKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIREL
350 360 370 380 390 400
pF1KB8 F
NP_061 TANFNFS
410
>>XP_011523023 (OMIM: 142966) PREDICTED: homeobox protei (430 aa)
initn: 571 init1: 266 opt: 300 Z-score: 203.6 bits: 46.1 E(85289): 0.00013
Smith-Waterman score: 341; 32.5% identity (58.9% similar) in 231 aa overlap (62-271:19-244)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
XP_011 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
XP_011 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180 190
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN-----EGNKGAGAGDPGSL
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
XP_011 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTEGCGGGGGGGGGGG
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB8 VSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDR
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
XP_011 SGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL
170 180 190 200 210 220
260 270 280
pF1KB8 LNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
XP_011 LNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTP
230 240 250 260 270 280
>>XP_005257334 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 571 init1: 266 opt: 299 Z-score: 203.0 bits: 46.0 E(85289): 0.00014
Smith-Waterman score: 339; 32.3% identity (58.6% similar) in 232 aa overlap (62-271:19-245)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
XP_005 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
XP_005 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN------EGNKGAGAGDPGS
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
XP_005 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSD
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
XP_005 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
170 180 190 200 210 220
250 260 270 280
pF1KB8 RLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
XP_005 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
230 240 250 260 270 280
>>XP_011523012 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 571 init1: 266 opt: 299 Z-score: 203.0 bits: 46.0 E(85289): 0.00014
Smith-Waterman score: 339; 32.3% identity (58.6% similar) in 232 aa overlap (62-271:19-245)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
XP_011 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
XP_011 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN------EGNKGAGAGDPGS
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
XP_011 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSD
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
XP_011 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
170 180 190 200 210 220
250 260 270 280
pF1KB8 RLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
XP_011 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
230 240 250 260 270 280
>>XP_011523022 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 571 init1: 266 opt: 299 Z-score: 203.0 bits: 46.0 E(85289): 0.00014
Smith-Waterman score: 339; 32.3% identity (58.6% similar) in 232 aa overlap (62-271:19-245)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
XP_011 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
XP_011 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN------EGNKGAGAGDPGS
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
XP_011 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSD
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
XP_011 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
170 180 190 200 210 220
250 260 270 280
pF1KB8 RLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
XP_011 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
230 240 250 260 270 280
>>XP_006721917 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 571 init1: 266 opt: 299 Z-score: 203.0 bits: 46.0 E(85289): 0.00014
Smith-Waterman score: 339; 32.3% identity (58.6% similar) in 232 aa overlap (62-271:19-245)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
XP_006 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
XP_006 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN------EGNKGAGAGDPGS
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
XP_006 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSD
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
XP_006 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
170 180 190 200 210 220
250 260 270 280
pF1KB8 RLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
XP_006 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
230 240 250 260 270 280
>>NP_002137 (OMIM: 142966) homeobox protein Hox-B3 isofo (431 aa)
initn: 571 init1: 266 opt: 299 Z-score: 203.0 bits: 46.0 E(85289): 0.00014
Smith-Waterman score: 339; 32.3% identity (58.6% similar) in 232 aa overlap (62-271:19-245)
40 50 60 70 80 90
pF1KB8 SGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPY-LGSPVSLNPPFGRTCELARVED
..:: .: : .::: . .: .
NP_002 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHL----E
10 20 30 40
100 110 120 130 140
pF1KB8 GKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLPLE--PSGPPALGFKYDYAAGG
: : : :. . :. . .... ... :: : :: :..:: . . ....
NP_002 GD-YQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNS
50 60 70 80 90 100
150 160 170 180
pF1KB8 GGGDGGGGAGPPHDPPSCQSL----------ESDSSSSLLN------EGNKGAGAGDPGS
..: : . .:::. :. .: :: ..:.: : :: :.:.: :.
NP_002 SNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSD
. . ::: ...: : .. :.. : :.. ::.::: :: :... : :: :...
NP_002 GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN
170 180 190 200 210 220
250 260 270 280
pF1KB8 RLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
::::..:.:::::::::: :.
NP_002 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMT
230 240 250 260 270 280
282 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:32:52 2016 done: Fri Nov 4 16:32:53 2016
Total Scan time: 7.350 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]