FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8931, 282 aa
  1>>>pF1KB8931 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1411+/-0.000798; mu= 5.3615+/- 0.048
 mean_var=256.9448+/-54.453, 0's: 0 Z-trim(116.6): 123  B-trim: 158 in 1/50
 Lambda= 0.080012
 statistics sampled from 17051 (17188) to 17051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.528), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS8866.1 HOXC12 gene_id:3228|Hs108|chr12         ( 282) 1988 241.6 4.9e-64


>>CCDS8866.1 HOXC12 gene_id:3228|Hs108|chr12              (282 aa)
 initn: 1988 init1: 1988 opt: 1988  Z-score: 1263.2  bits: 241.6 E(32554): 4.9e-64
Smith-Waterman score: 1988; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
       ::::::::::::::::::::::::::::::::::::::::::
CCDS88 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
              250       260       270       280  




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:32:52 2016 done: Fri Nov  4 16:32:52 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]