FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8929, 281 aa
  1>>>pF1KB8929 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1635+/-0.000856; mu= 0.1356+/- 0.052
 mean_var=242.2617+/-48.225, 0's: 0 Z-trim(116.6): 10  B-trim: 170 in 1/52
 Lambda= 0.082401
 statistics sampled from 17254 (17261) to 17254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS9589.1 CEBPE gene_id:1053|Hs108|chr14          ( 281) 1930 241.3 5.9e-64


>>CCDS9589.1 CEBPE gene_id:1053|Hs108|chr14               (281 aa)
 initn: 1930 init1: 1930 opt: 1930  Z-score: 1261.6  bits: 241.3 E(32554): 5.9e-64
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB8 MSHGTYYECEPRGGQQPLEFSGGRAGPGELGDMCEHEASIDLSAYIESGEEQLLSDLFAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MSHGTYYECEPRGGQQPLEFSGGRAGPGELGDMCEHEASIDLSAYIESGEEQLLSDLFAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KPAPEARGLKGPGTPAFPHYLPPDPRPFAYPPHTFGPDRKALGPGIYSSPGSYDPRAVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KPAPEARGLKGPGTPAFPHYLPPDPRPFAYPPHTFGPDRKALGPGIYSSPGSYDPRAVAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KEEPRGPEGSRAASRGSYNPLQYQVAHCGQTAMHLPPTLAAPGQPLRVLKAPLATAAPPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KEEPRGPEGSRAASRGSYNPLQYQVAHCGQTAMHLPPTLAAPGQPLRVLKAPLATAAPPC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPLLKAPSPAGPLHKGKKAVNKDSLEYRLRRERNNIAVRKSRDKAKRRILETQQKVLEYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SPLLKAPSPAGPLHKGKKAVNKDSLEYRLRRERNNIAVRKSRDKAKRRILETQQKVLEYM
              190       200       210       220       230       240

              250       260       270       280 
pF1KB8 AENERLRSRVEQLTQELDTLRNLFRQIPEAANLIKGVGGCS
       :::::::::::::::::::::::::::::::::::::::::
CCDS95 AENERLRSRVEQLTQELDTLRNLFRQIPEAANLIKGVGGCS
              250       260       270       280 




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:03:02 2016 done: Sat Nov  5 20:03:02 2016
 Total Scan time:  2.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]