Result of FASTA (ccds) for
pF1KB8925
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8925, 273 aa
1>>>pF1KB8925 273 - 273 aa - 273 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1390+/-0.000687; mu= 8.5172+/- 0.042
mean_var=145.0253+/-30.733, 0's: 0 Z-trim(115.1): 168 B-trim: 853 in 1/50
Lambda= 0.106501
statistics sampled from 15442 (15628) to 15442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.48), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS13145.1 2 gene_id:4821|Hs108|chr20 ( 273) 1845 294.1 7.1e-80
CCDS41558.1 3 gene_id:159296|Hs108|chr10 ( 364) 481 84.6 1.1e-16
CCDS4387.1 5 gene_id:1482|Hs108|chr5 ( 324) 466 82.3 4.9e-16
CCDS9660.1 8 gene_id:26257|Hs108|chr14 ( 239) 436 77.6 9.5e-15
CCDS9659.1 1 gene_id:7080|Hs108|chr14 ( 371) 368 67.3 1.9e-11
CCDS41945.1 1 gene_id:7080|Hs108|chr14 ( 401) 368 67.3 2e-11
CCDS42855.1 4 gene_id:644524|Hs108|chr20 ( 354) 365 66.8 2.5e-11
>>CCDS13145.1 2 gene_id:4821|Hs108|chr20 (273 aa)
initn: 1845 init1: 1845 opt: 1845 Z-score: 1547.5 bits: 294.1 E(32554): 7.1e-80
Smith-Waterman score: 1845; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)
10 20 30 40 50 60
pF1KB8 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 YKMKRARAEKGMEVTPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPFSAYSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YKMKRARAEKGMEVTPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPFSAYSAQ
190 200 210 220 230 240
250 260 270
pF1KB8 SLQHMQYNAQYSSASTPQYPTAHPLVQAQQWTW
:::::::::::::::::::::::::::::::::
CCDS13 SLQHMQYNAQYSSASTPQYPTAHPLVQAQQWTW
250 260 270
>>CCDS41558.1 3 gene_id:159296|Hs108|chr10 (364 aa)
initn: 477 init1: 334 opt: 481 Z-score: 413.1 bits: 84.6 E(32554): 1.1e-16
Smith-Waterman score: 485; 40.1% identity (61.3% similar) in 279 aa overlap (6-255:8-275)
10 20 30
pF1KB8 MSLTNTKTGFSVKDILDLPDTN----------DEEG---------SVAEGPEEENEGP
:.: :::::::.: . . : : ..::: . . :
CCDS41 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 EPAKRAGPLGQGALDAVQSLPLKNPFYDSSDNP--YTRWL---ASTEGLQYSLHGLAAGA
: . : :. ..:: . ::. : :.. . . .: .. . ..
CCDS41 EDEEDEGE----KLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD
70 80 90 100 110
100 110 120 130 140 150
pF1KB8 PPQDSSS--KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRY
: : . :: : ..: . ...: : ..:: :::::.::..::::::.::::
CCDS41 RSQKSCQLKKSLETAGDCKAAEESERP----KPRSRRKPRVLFSQAQVFELERRFKQQRY
120 130 140 150 160 170
160 170 180 190 200
pF1KB8 LSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEV---TPLPSPRRVAVPVLV
::::::::::: ..:: :::::::::.::: :: : .:..:. .: : ::::::::::
CCDS41 LSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLV
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 RDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQ
:::::: . .:: .: ...: :::: .:. . :. . ..:.
CCDS41 RDGKPCVTPSAQAYGAP-YSVGA--SAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSS
240 250 260 270 280
270
pF1KB8 QWTW
CCDS41 SYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAA
290 300 310 320 330 340
>>CCDS4387.1 5 gene_id:1482|Hs108|chr5 (324 aa)
initn: 383 init1: 348 opt: 466 Z-score: 401.3 bits: 82.3 E(32554): 4.9e-16
Smith-Waterman score: 466; 37.2% identity (60.3% similar) in 282 aa overlap (6-264:8-275)
10 20 30 40
pF1KB8 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPE-----EENEGP--------EPAKRA
: : :::::::.: .... :.: . : : . .: .: :
CCDS43 MFPSPALTPTPFSVKDILNL---EQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 GPLGQGALDAVQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPE
:: . :. .:: . .: : . . .. . : .: ... :
CCDS43 GPEA-----AAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 PSADESPDNDKETPGGGGD---AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLA
: .. . ..: . ... : ..:: :::::.::.:::::::.::::::::::..::
CCDS43 LCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLA
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 SLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSP-----RRVAVPVLVRDGKPCHA
:...:: :::::::::.::: :: : .. .:.. :: : ::.:::::::::::: .
CCDS43 SVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLG
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 LKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYP--TAHPLVQAQQWTW
.: : .. .:. .:.: . : . ..: .: : .:.:
CCDS43 DSAP--YAPAYGVGLNPYGYNA----YPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATA
240 250 260 270 280
CCDS43 AANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
290 300 310 320
>>CCDS9660.1 8 gene_id:26257|Hs108|chr14 (239 aa)
initn: 557 init1: 388 opt: 436 Z-score: 378.2 bits: 77.6 E(32554): 9.5e-15
Smith-Waterman score: 526; 45.8% identity (64.0% similar) in 236 aa overlap (54-273:21-239)
30 40 50 60 70 80
pF1KB8 EEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNPFYDSSD-NPYTRWLASTEG
:: : :: ..: . . .: . :: : .:
CCDS96 MATSGRLSFTVRSLLDLPEQDA-QHLPRREPEPRAPQPDPCAAWLDSERG
10 20 30 40
90 100 110 120 130 140
pF1KB8 LQYSLHGLAAGAPPQDSSS-KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTY
.: : .: :: .. :.... :. .::. :: :..:::::::::::
CCDS96 -HY---------PSSDESSLETSPPDSSQRPSARPASPGS--DAEKRKKRRVLFSKAQTL
50 60 70 80 90
150 160 170 180 190
pF1KB8 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPS--
::::::::::::::::::.::::.:::::::::::::::::.::::: . : : .
CCDS96 ELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASA
100 110 120 130 140 150
200 210 220 230 240
pF1KB8 -----P---RRVAVPVLVRDGKPCHALKAQDL--AAATFQAGIPFSAYSAQSLQHMQYNA
: :::.::::::::.:: . . .. ::: . : : .: : : : :
CCDS96 ELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAA--ACPLP--GYPA
160 170 180 190 200 210
250 260 270
pF1KB8 QYSSASTPQYPTAHPLVQAQ--QWTW
... .:. . :.. .:.:
CCDS96 FGPGSALGLFPAYQHLASPALVSWNW
220 230
>>CCDS9659.1 1 gene_id:7080|Hs108|chr14 (371 aa)
initn: 491 init1: 357 opt: 368 Z-score: 319.2 bits: 67.3 E(32554): 1.9e-11
Smith-Waterman score: 456; 38.9% identity (59.1% similar) in 257 aa overlap (26-255:62-303)
10 20 30 40 50
pF1KB8 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPEEENEG-PEPAKRA-GPLGQGAL
:.:. . . : :. .. : : .: :
CCDS96 GGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNL
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB8 DAVQSLPLKNPFYDSSDNPYTR--WLASTEGLQY-SLHGLAAGAPPQDSSSKSPEPSADE
.. :: :. :. : . : ... .. .. . . : .. :. . : .
CCDS96 GNMSELP---PYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGD
100 110 120 130 140
120 130 140 150 160 170
pF1KB8 SPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPT
: : .. .::::::::.::.:::::::.::.::::::::::::.:.::::
CCDS96 VSKNMAPLP-----SAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPT
150 160 170 180 190 200
180 190 200
pF1KB8 QVKIWFQNHRYKMKRARAEKGMEV--------------TPLP--------SPRRVAVPVL
::::::::::::::: .:. . : : ::::::::::
CCDS96 QVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVL
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 VRDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQA
:.:::::.: : .::..:. .. :. ::. :: ..:.
CCDS96 VKDGKPCQA-GAPAPGAASLQG------HAQQQAQHQAQAAQAAAAAISVGSGGAGLGAH
270 280 290 300 310
270
pF1KB8 QQWTW
CCDS96 PGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW
320 330 340 350 360 370
>>CCDS41945.1 1 gene_id:7080|Hs108|chr14 (401 aa)
initn: 491 init1: 357 opt: 368 Z-score: 318.7 bits: 67.3 E(32554): 2e-11
Smith-Waterman score: 456; 38.9% identity (59.1% similar) in 257 aa overlap (26-255:92-333)
10 20 30 40 50
pF1KB8 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPEEENEG-PEPAKRA-GPLGQGAL
:.:. . . : :. .. : : .: :
CCDS41 GGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNL
70 80 90 100 110 120
60 70 80 90 100 110
pF1KB8 DAVQSLPLKNPFYDSSDNPYTR--WLASTEGLQY-SLHGLAAGAPPQDSSSKSPEPSADE
.. :: :. :. : . : ... .. .. . . : .. :. . : .
CCDS41 GNMSELP---PYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGD
130 140 150 160 170
120 130 140 150 160 170
pF1KB8 SPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPT
: : .. .::::::::.::.:::::::.::.::::::::::::.:.::::
CCDS41 VSKNMAPLP-----SAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPT
180 190 200 210 220 230
180 190 200
pF1KB8 QVKIWFQNHRYKMKRARAEKGMEV--------------TPLP--------SPRRVAVPVL
::::::::::::::: .:. . : : ::::::::::
CCDS41 QVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVL
240 250 260 270 280 290
210 220 230 240 250 260
pF1KB8 VRDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQA
:.:::::.: : .::..:. .. :. ::. :: ..:.
CCDS41 VKDGKPCQA-GAPAPGAASLQG------HAQQQAQHQAQAAQAAAAAISVGSGGAGLGAH
300 310 320 330 340
270
pF1KB8 QQWTW
CCDS41 PGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW
350 360 370 380 390 400
>>CCDS42855.1 4 gene_id:644524|Hs108|chr20 (354 aa)
initn: 536 init1: 357 opt: 365 Z-score: 316.9 bits: 66.8 E(32554): 2.5e-11
Smith-Waterman score: 474; 46.9% identity (63.0% similar) in 192 aa overlap (36-216:117-288)
10 20 30 40 50 60
pF1KB8 TKTGFSVKDILDLPDTNDEEGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNPF
: : :: : : .: . : .:
CCDS42 AAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANP--DPR
90 100 110 120 130 140
70 80 90 100 110 120
pF1KB8 YDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGDA
:.: .:... . :.. . : .: ...:: : .... :
CCDS42 YSS----ISRFMGPSAGVNVAGMGSLTGIA---DAAKSLGP-----------LHAAAAAA
150 160 170 180
130 140 150 160 170 180
pF1KB8 GKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR
. .::::::::.::.:::::::.::.::::::::::::.:.:::::::::::::::::::
CCDS42 APRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 ARAEK-----------GMEVTPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPF
.: : : ::::::::::::.:::::.
CCDS42 QAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAP
250 260 270 280 290 300
240 250 260 270
pF1KB8 SAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQQWTW
CCDS42 TPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
310 320 330 340 350
273 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:31:11 2016 done: Fri Nov 4 16:31:11 2016
Total Scan time: 2.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]