Result of FASTA (omim) for
pF1KB8922
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8922, 269 aa
1>>>pF1KB8922 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4909+/-0.000377; mu= -3.3544+/- 0.024
mean_var=229.6980+/-46.201, 0's: 0 Z-trim(120.8): 220 B-trim: 0 in 0/61
Lambda= 0.084624
statistics sampled from 36327 (36566) to 36327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.429), width: 16
Scan time: 7.980
The best scores are: opt bits E(85289)
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 1795 231.3 1.5e-60
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 1066 142.3 9.2e-34
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 525 76.2 6e-14
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 497 72.8 7.4e-13
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 497 72.8 7.4e-13
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 497 72.9 8.6e-13
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 487 71.6 1.7e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 462 68.5 1.4e-11
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 460 68.2 1.5e-11
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 460 68.2 1.5e-11
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 460 68.2 1.5e-11
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 460 68.3 1.8e-11
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 435 65.2 1.3e-10
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 431 64.6 1.3e-10
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 431 64.7 1.8e-10
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 431 64.7 1.8e-10
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 423 63.7 3.3e-10
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 379 58.4 1.7e-08
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 376 58.0 2.2e-08
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 379 58.5 2.4e-08
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 379 58.5 2.4e-08
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 379 58.5 2.4e-08
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 379 58.5 2.4e-08
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 379 58.5 2.4e-08
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 379 58.5 2.4e-08
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 379 58.5 2.4e-08
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 351 54.7 8.2e-08
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 358 55.8 8.9e-08
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 358 55.8 8.9e-08
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 356 55.6 1e-07
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 346 54.3 2.4e-07
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 332 52.7 1.1e-06
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 329 52.3 1.1e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 330 52.5 1.3e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 330 52.5 1.3e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 330 52.5 1.5e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 330 52.5 1.5e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 330 52.5 1.5e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 330 52.5 1.5e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 330 52.5 1.5e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 330 52.5 1.5e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 326 52.0 1.6e-06
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 330 52.6 1.9e-06
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 1795 init1: 1795 opt: 1795 Z-score: 1208.1 bits: 231.3 E(85289): 1.5e-60
Smith-Waterman score: 1795; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB8 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI
190 200 210 220 230 240
250 260
pF1KB8 WFQNRRMKWKKDNKLKSMSLATAGSAFQP
:::::::::::::::::::::::::::::
NP_002 WFQNRRMKWKKDNKLKSMSLATAGSAFQP
250 260
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 951 init1: 560 opt: 1066 Z-score: 727.1 bits: 142.3 E(85289): 9.2e-34
Smith-Waterman score: 1066; 62.3% identity (78.3% similar) in 281 aa overlap (1-269:1-270)
10 20 30 40 50 60
pF1KB8 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
::::::::: ::::::::::: :::. ::.: ..:: :.::.: :::.::::::::.::.
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
10 20 30 40 50 60
70 80 90 100
pF1KB8 ASSSHFGAVGESSRAFPAPAQ----EPRFRQAASSCSLSSPESLPCT------NGDSH-G
:.:::. :: .:.. : :. :::. : :.: .:. :::. ..::: :
NP_061 --SGHFGS-GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 AKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAP
.: : :. : ...:.:. .. ..::. :.: . : : :: :: . ::
NP_061 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPA---SSEQASAQSEP----SPAP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 EGQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
.: :::.::::::::::: . ::.:::::::::::::::::::::::::::::::::::
NP_061 PAQ-PQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
180 190 200 210 220
230 240 250 260
pF1KB8 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
:::::::::::::::::::::::::::::::.:.::.::.:
NP_061 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
230 240 250 260 270
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 521 init1: 404 opt: 525 Z-score: 371.4 bits: 76.2 E(85289): 6e-14
Smith-Waterman score: 584; 43.0% identity (63.1% similar) in 263 aa overlap (1-257:1-218)
10 20 30 40 50
pF1KB8 MSSYFVNSFSGRYPNGPDYQLL---NYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVN
:::: .::: . :: : :.. ::::.: ...: : :.:.:::..
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR------------YCYGGLDLSIT
10 20 30 40
60 70 80 90 100 110
pF1KB8 RSSASSSHFGAVGESSRAFPAPAQEPRFRQA-ASSCSLSSPESLPCTNGDSHGAKPS--A
:: :: .. . .. . :. :. . . : :.
NP_061 ------------------FPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP
..: . . ....: . ..:..:.: .: .: ..:. . .:: : :: :
NP_061 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPA-GLSQP-P------AP----P
100 110 120 130
180 190 200 210 220 230
pF1KB8 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
::.::: :::.::. ::::.::.::::::::::::::::::::::::::::. :::.
NP_061 QIYPWMTKLHMSHET---DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN
140 150 160 170 180 190
240 250 260
pF1KB8 ERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
::::::::::::::::::.:.::
NP_061 ERQIKIWFQNRRMKWKKDSKMKSKEAL
200 210 220
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 452 init1: 384 opt: 497 Z-score: 351.8 bits: 72.8 E(85289): 7.4e-13
Smith-Waterman score: 520; 46.2% identity (67.2% similar) in 195 aa overlap (76-266:53-228)
50 60 70 80 90 100
pF1KB8 GYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC-SLSSPESLPCTN
.: : .: . . :: ::..:
NP_055 YSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------
30 40 50 60 70
110 120 130 140 150 160
pF1KB8 GDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMAT
:.:.: : :.. . ...: . . .. :::: : : .:: :
NP_055 GNSRGHGP-AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC---------SQPAPDHP
80 90 100 110 120
170 180 190 200 210 220
pF1KB8 STAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTR
:.:: .. : ..:::.:.:.: ...: . ::.:::::: :.::::::::.::::::
NP_055 SSAA--SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR
130 140 150 160 170 180
230 240 250 260
pF1KB8 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
::::::::.::::::::::::::::::::::..: . .. .: :
NP_055 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
190 200 210 220 230 240
NP_055 EDHSQSATPPEQQRAEDITRL
250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 452 init1: 384 opt: 497 Z-score: 351.8 bits: 72.8 E(85289): 7.4e-13
Smith-Waterman score: 520; 46.2% identity (67.2% similar) in 195 aa overlap (76-266:53-228)
50 60 70 80 90 100
pF1KB8 GYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC-SLSSPESLPCTN
.: : .: . . :: ::..:
NP_705 YSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------
30 40 50 60 70
110 120 130 140 150 160
pF1KB8 GDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMAT
:.:.: : :.. . ...: . . .. :::: : : .:: :
NP_705 GNSRGHGP-AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC---------SQPAPDHP
80 90 100 110 120
170 180 190 200 210 220
pF1KB8 STAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTR
:.:: .. : ..:::.:.:.: ...: . ::.:::::: :.::::::::.::::::
NP_705 SSAA--SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR
130 140 150 160 170 180
230 240 250 260
pF1KB8 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
::::::::.::::::::::::::::::::::..: . .. .: :
NP_705 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
190 200 210 220 230 240
NP_705 EDHSQSATPPEQQRAEDITRL
250 260
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 494 init1: 404 opt: 497 Z-score: 350.6 bits: 72.9 E(85289): 8.6e-13
Smith-Waterman score: 531; 35.6% identity (59.6% similar) in 292 aa overlap (1-266:3-287)
10 20 30 40 50
pF1KB8 MSSYFVNS--FSGRYPNGPDYQLLNYGSGSSLSG-----SYRDPAAMHTGSYGYNYNG
:::...:: . ..: .: . :::.. .: .:..: : : .
NP_002 MTMSSFLINSNYIEPKFPPFEEYAQ-HSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 MDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAK
. . . ..:... :.:: : : : .. . . : . .: : :
NP_002 LPHAGGGREPTASYYAPRTAREPAYPAAALYP----AHGAADTAYPYGY--RGGASPGRP
60 70 80 90 100 110
120 130 140 150
pF1KB8 PSASSPSDQATSASSSANFTEI----------DEASASSEP---EEAASQLSSPSLARAQ
:. .: :: . . . . ... .: . : : : . . :. . :
NP_002 PQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAP
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 PEPMATSTAAP---EGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKE
:. . .: .:. : ..:::.:.:.: ...: . ::.:::::: :.::::::
NP_002 ACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKE
180 190 200 210 220 230
220 230 240 250 260
pF1KB8 FHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
:::::::::::::::::.:::::::.::::::::::::::.:: . .. ...::
NP_002 FHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGP
240 250 260 270 280 290
NP_002 PGKAQTQSPHLHPHPHPSTSTPVPSSI
300 310 320
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 531 init1: 398 opt: 487 Z-score: 345.5 bits: 71.6 E(85289): 1.7e-12
Smith-Waterman score: 487; 58.7% identity (77.8% similar) in 126 aa overlap (144-266:111-234)
120 130 140 150 160 170
pF1KB8 ASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQT
::.: ::: .:. : . .
NP_076 PPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVS--SSPPPPPCAQNPLHPSPSHSACKE
90 100 110 120 130
180 190 200 210 220 230
pF1KB8 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA
: ..:::::.:.: ...: . ::.:::::: :.::::::::.:::::::::.:::::
NP_076 PVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHA
140 150 160 170 180 190
240 250 260
pF1KB8 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
::::::::::::::::::::::.:: . .. ..:.:
NP_076 LCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
200 210 220 230 240 250
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 498 init1: 399 opt: 462 Z-score: 328.9 bits: 68.5 E(85289): 1.4e-11
Smith-Waterman score: 466; 41.5% identity (62.8% similar) in 207 aa overlap (63-266:34-226)
40 50 60 70 80 90
pF1KB8 SYRDPAAMHTGSYGYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC
....:. : .. : :. :: . .
NP_055 SSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGG-GAQGADFQPPGLYPRPDFGEQPF
10 20 30 40 50 60
100 110 120 130 140 150
pF1KB8 SLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSP
. :.: . .:: .:.. . : . : . : : . :.:
NP_055 GGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAP----PAPPPAPLPGARAYSQSDP
70 80 90 100 110
160 170 180 190 200
pF1KB8 SLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLEL
. :: : .:. : ..:::.:.:.. ..:: . ::.:::::: :.:::
NP_055 K----QP-PSGTALKQPA----VVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLEL
120 130 140 150 160
210 220 230 240 250 260
pF1KB8 EKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
::::::::::::::::::::.::::::::::::::::::::::.:: . . ...:.
NP_055 EKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSS
170 180 190 200 210 220
NP_055 SCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 507 init1: 411 opt: 460 Z-score: 328.4 bits: 68.2 E(85289): 1.5e-11
Smith-Waterman score: 482; 40.0% identity (58.1% similar) in 270 aa overlap (1-263:1-215)
10 20 30 40 50
pF1KB8 MSSYFVNS-FSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRS
:::::::: : .: . : :. :..: :: . . :: . :.: ..
XP_005 MSSYFVNSTFPVTLASGQESFL---GQLPLYSSGYADPLRHYPAPYGPG-PGQD----KG
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SASSSHFGAVGES-SRAFP---APAQEPRF-RQAASSCSLSSPESLPCTNGDSHGAKPSA
:.::.. .: . .:: : .:: : : :. :.:.::. . : :
XP_005 FATSSYYPPAGGGYGRAAPCDYGPA--PAFYREKESACALSGADEQP----------PFH
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP
: .. :.... : : .: . : ::
XP_005 PEPR-KSDCAQDKSVFGETEEQKCS---------------------------------TP
110 120
180 190 200 210 220 230
pF1KB8 QIFPWMRKLHISHDMT-GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL
..:::.... .. . ::.:.:.: .::::::::::::::.::::::::::::::::::
XP_005 -VYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCL
130 140 150 160 170 180
240 250 260
pF1KB8 SERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
.:::::::::::::::::..:: : : .:
XP_005 TERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
190 200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 507 init1: 411 opt: 460 Z-score: 328.4 bits: 68.2 E(85289): 1.5e-11
Smith-Waterman score: 482; 40.0% identity (58.1% similar) in 270 aa overlap (1-263:1-215)
10 20 30 40 50
pF1KB8 MSSYFVNS-FSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRS
:::::::: : .: . : :. :..: :: . . :: . :.: ..
NP_061 MSSYFVNSTFPVTLASGQESFL---GQLPLYSSGYADPLRHYPAPYGPG-PGQD----KG
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SASSSHFGAVGES-SRAFP---APAQEPRF-RQAASSCSLSSPESLPCTNGDSHGAKPSA
:.::.. .: . .:: : .:: : : :. :.:.::. . : :
NP_061 FATSSYYPPAGGGYGRAAPCDYGPA--PAFYREKESACALSGADEQP----------PFH
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP
: .. :.... : : .: . : ::
NP_061 PEPR-KSDCAQDKSVFGETEEQKCS---------------------------------TP
110 120
180 190 200 210 220 230
pF1KB8 QIFPWMRKLHISHDMT-GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL
..:::.... .. . ::.:.:.: .::::::::::::::.::::::::::::::::::
NP_061 -VYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCL
130 140 150 160 170 180
240 250 260
pF1KB8 SERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
.:::::::::::::::::..:: : : .:
NP_061 TERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
190 200 210 220
269 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:30:40 2016 done: Fri Nov 4 16:30:41 2016
Total Scan time: 7.980 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]