Result of FASTA (omim) for
pF1KB8917
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8917, 260 aa
1>>>pF1KB8917 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2148+/-0.000347; mu= 8.0237+/- 0.022
mean_var=186.1210+/-38.059, 0's: 0 Z-trim(120.8): 201 B-trim: 362 in 2/54
Lambda= 0.094011
statistics sampled from 36246 (36527) to 36246 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.428), width: 16
Scan time: 5.820
The best scores are: opt bits E(85289)
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 1815 257.7 1.5e-68
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 714 108.4 1.3e-23
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 693 105.6 9.9e-23
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 531 83.7 4.9e-16
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 464 74.7 2.9e-13
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 449 72.6 1.1e-12
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 431 70.2 5.7e-12
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 339 57.7 3.3e-08
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 335 57.1 4.4e-08
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 324 55.6 1.3e-07
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 322 55.2 1.3e-07
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 313 54.1 3.4e-07
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 309 53.4 4.3e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 310 53.7 4.5e-07
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 307 53.1 4.9e-07
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 306 53.1 6.8e-07
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 304 52.8 7e-07
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 302 52.5 8e-07
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 301 52.4 9.3e-07
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 301 52.4 9.3e-07
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 301 52.4 1e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 299 52.2 1.4e-06
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 294 51.4 1.7e-06
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 290 51.0 3.1e-06
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 282 49.4 3.2e-06
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 288 50.6 3.3e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 286 50.5 5.1e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 283 50.0 5.4e-06
NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 282 49.9 6.1e-06
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 283 50.1 6.9e-06
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 277 49.1 8.4e-06
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 277 49.1 8.4e-06
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 277 49.1 8.4e-06
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 277 49.2 1e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 278 49.5 1.2e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 278 49.5 1.2e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 278 49.5 1.2e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 278 49.5 1.2e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 278 49.5 1.2e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 278 49.5 1.2e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 278 49.5 1.2e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 274 48.9 1.5e-05
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 273 48.7 1.6e-05
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 267 47.5 1.7e-05
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 270 48.2 1.8e-05
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 270 48.2 1.8e-05
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 271 48.4 1.9e-05
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204) 266 47.5 2.2e-05
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 267 47.7 2.2e-05
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 266 47.6 2.6e-05
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 1815 init1: 1815 opt: 1815 Z-score: 1351.7 bits: 257.7 E(85289): 1.5e-68
Smith-Waterman score: 1815; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 VFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF
190 200 210 220 230 240
250 260
pF1KB8 QNRRMKMKKMNKEKTDKEQS
::::::::::::::::::::
NP_008 QNRRMKMKKMNKEKTDKEQS
250 260
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 769 init1: 485 opt: 714 Z-score: 544.9 bits: 108.4 E(85289): 1.3e-23
Smith-Waterman score: 778; 51.9% identity (68.7% similar) in 262 aa overlap (1-254:1-247)
10 20 30 40 50 60
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
:: .: .:.:::::.:::..:: ..:: .: . :..: : . .:::::: ::
NP_076 MSISGTLSSYYVDSIISHESEDAPPAKFP-SGQY-ASSRQPGHAEHL-EFPSCSFQPKAP
10 20 30 40 50
70 80 90 100 110
pF1KB8 VFSTSWAPVPSQSS----VVYHPY-GPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH
::..::::. ..: ::::: :: :..::.:::::: . . : : .
NP_076 VFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP----GQGQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YALKPDAYPGRRADCGPGE--GRSYPDY-MYGSPGELRDRAPQTLPSPEADALAGSKHKE
:.: . : .::: .. :.: . : :. . : . ::. ::
NP_076 AAVKAEPLLG-----APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKE
120 130 140 150 160
180 190 200 210 220 230
pF1KB8 EKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLT
. : .:: :::.::::.::::::::::::::::::::::::::::::.::::.:::.
NP_076 RP---DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLS
170 180 190 200 210 220
240 250 260
pF1KB8 ERQVKIWFQNRRMKMKKMNKEKTDKEQS
:::::::::::::::::::::.
NP_076 ERQVKIWFQNRRMKMKKMNKEQGKE
230 240 250
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 800 init1: 537 opt: 693 Z-score: 529.1 bits: 105.6 E(85289): 9.9e-23
Smith-Waterman score: 824; 51.3% identity (70.4% similar) in 277 aa overlap (1-258:1-272)
10 20 30 40 50
pF1KB8 MSATGPISNYYVDS-LISHDNEDLLA-SRF-PATGAHPAAARPSGLVPDCSDFPSCSFAP
:..:: ..:::::: :.. : : :. .:. :.: ..: : .. . . :: :::
NP_689 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP--RQAATLAEHPDFSPCSFQS
10 20 30 40 50
60 70 80 90 100
pF1KB8 KPAVFSTSWAPVPSQSS-----VVYH-----PY-GPQPHLGA---DTRYMRTWLEPLSGA
: .::..:: :: . .. .::: :: :: ..: : ::::.:::: ::
NP_689 KATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 VSFPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPE
.:: ..:.. : :..::. .::.:: . . : :: ::: :.. :. :
NP_689 LSFAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR
.: : .: .::.::.:::.::::::::::::::.:::::::::::::::::::
NP_689 NNAENESGG--DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR
180 190 200 210 220 230
230 240 250 260
pF1KB8 RYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
::::::.:::::::::::::::::::::.::... :
NP_689 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
240 250 260 270
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 827 init1: 515 opt: 531 Z-score: 408.9 bits: 83.7 E(85289): 4.9e-16
Smith-Waterman score: 703; 47.8% identity (59.5% similar) in 289 aa overlap (49-257:62-350)
20 30 40 50 60 70
pF1KB8 DNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAPVPSQS-----
.: ::::::. ::::.::. ::::
NP_055 EVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAA
40 50 60 70 80 90
80 90 100
pF1KB8 -SVVYHPYGPQPHLGADT----RYMRTWLEPLSG-------------------AVSFPSF
: .:::: : : :.:.. ::.:.:.::: : ::
NP_055 MSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSG
100 110 120 130 140 150
110 120 130 140
pF1KB8 PAGGRHYALKPD--AYPG-------------------RRADCG---PGEGRSYPDYMYGS
::.::::..::. : :. .:..:. ..: : :.. .:
NP_055 PANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNS
160 170 180 190 200 210
150 160 170
pF1KB8 --------------PGELRDRAPQTLPSPEADA-----LAGSKHKEE--------KADLD
:: : : : : .: . : . ::: . .::
NP_055 FLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLD
220 230 240 250 260 270
180 190 200 210 220 230
pF1KB8 PSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKI
:.::.::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_055 PNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKI
280 290 300 310 320 330
240 250 260
pF1KB8 WFQNRRMKMKKMNKEKTDKEQS
::::::::::::.::: :
NP_055 WFQNRRMKMKKMSKEKCPKGD
340 350
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 470 init1: 392 opt: 464 Z-score: 359.0 bits: 74.7 E(85289): 2.9e-13
Smith-Waterman score: 472; 40.3% identity (58.8% similar) in 243 aa overlap (25-258:175-402)
10 20 30 40 50
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPA--AARPSGLVPDCSDFPS
:.. : ..: : : : : :: . .
NP_061 PQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGT
150 160 170 180 190 200
60 70 80 90 100 110
pF1KB8 CSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAG
: .: :. : : : ... : .::: . : : :.. .:
NP_061 SSGVPVPGYFRLSQAYGTAKG--YGSGGGGAQQLGAGPFPAQP---PGRGFDLPPALASG
210 220 230 240 250
120 130 140 150 160
pF1KB8 GRHYALKP---DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAP----QTLPSPEADAL
. : : :. : :: : : . . ..: . .. .: .. ::: :.:
NP_061 SADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSL
260 270 280 290 300 310
170 180 190 200 210 220
pF1KB8 AGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV
..:: :.: :::. :.: :::::::::.:::::::::::::::::.:: :.
NP_061 GNSKG--ENA--------ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEI
320 330 340 350 360
230 240 250 260
pF1KB8 ARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
.: ..::.:::::::::::::.::::.:. .:
NP_061 SRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
370 380 390 400 410
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 439 init1: 418 opt: 449 Z-score: 349.0 bits: 72.6 E(85289): 1.1e-12
Smith-Waterman score: 470; 35.9% identity (60.2% similar) in 259 aa overlap (6-258:95-334)
10 20 30
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHP
:.:. ....: . : . . :
NP_059 ALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGP
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB8 AAARPSGLVPD-C---SDFPSCSFA-PKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADT
:: : .:. : . : :. .:. . . .: : .. :. . :. .
NP_059 EAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRA
130 140 150 160 170 180
100 110 120 130 140
pF1KB8 RYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGEL-
..... :.: :::: : . . .:. ... :: :::.:
NP_059 EHLES--PQLGGKVSFPETPKSDSQTP-SPNEIKTEQSLAGPK----------GSPSESE
190 200 210 220 230
150 160 170 180 190 200
pF1KB8 RDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEK
..:: . ::. .. .: : .. : ..::. :.: :::::::::.:::::::
NP_059 KERAKAADSSPD------TSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEK
240 250 260 270 280
210 220 230 240 250 260
pF1KB8 EFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
::::::::::.:: :.....:::.:::::::::::::.::::.:. .:
NP_059 EFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT
290 300 310 320 330 340
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 485 init1: 411 opt: 431 Z-score: 335.8 bits: 70.2 E(85289): 5.7e-12
Smith-Waterman score: 435; 39.4% identity (66.2% similar) in 216 aa overlap (43-258:134-332)
20 30 40 50 60 70
pF1KB8 DSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAPVPSQ
:::. . .: :. : : . . ..
NP_002 TTNIKEESNCCMYSDKRNKLISAEVPSYQRLVPESCPVEN-PEVPVPGYFRLSQTYATGK
110 120 130 140 150 160
80 90 100 110 120 130
pF1KB8 SSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGP
. . :. .:. :..: ... :.: ::.. :.. :. .. : . . .
NP_002 T----QEYNNSPE-GSSTVMLQ--LNP-RGAAK-PQLSAAQLQMEKKMNEPVSGQEPTKV
170 180 190 200 210
140 150 160 170 180 190
pF1KB8 GEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARST
.. .: :. : : : : .. :::. ..:: : .. ..:..::. :.:
NP_002 SQVES-PEAKGGLPEERSCLAEVSVSSPEV------QEKESKEEIKSDTPTSNWLTAKSG
220 230 240 250 260
200 210 220 230 240 250
pF1KB8 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK
:::::::::.:::::::::::::::::.:: :... .:::.:::::::::::::.:::..
NP_002 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSR
270 280 290 300 310 320
260
pF1KB8 EKTDKEQS
:. .:
NP_002 ENRIRELTANLTFS
330 340
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 362 init1: 312 opt: 339 Z-score: 268.4 bits: 57.7 E(85289): 3.3e-08
Smith-Waterman score: 357; 34.5% identity (57.4% similar) in 235 aa overlap (30-254:116-328)
10 20 30 40 50
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSF-APK
:..: :: :.: . :. : ::.
NP_067 GGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPE
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB8 PAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYM----RTWLEPLSGAVSF----PSFP
: . :: : :.:: :: . .. :. . : .: .: :. :
NP_067 P----VCAAPGP--------PHGPA---GAASNFYSAVGRNGILP-QGFDQFYEAAPGPP
150 160 170 180
120 130 140 150 160 170
pF1KB8 AGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKH
.: . : : : .. :. :. ::: .: . :. :.. .:. .
NP_067 FAGPQPP-PPPAPPQPEGAADKGDPRTGAGGGGGSP--CTKATPGSEPKGAAEGSGGDGE
190 200 210 220 230 240
180 190 200 210 220
pF1KB8 KEE-KADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVL
.: . :. . . . .::::::::::: :::.::.::.:.....: ...:.:
NP_067 GPPGEAGAEKSSSA---VAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRML
250 260 270 280 290 300
230 240 250 260
pF1KB8 NLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
:::.::::::::::::: ::.:...
NP_067 NLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
310 320 330
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 345 init1: 304 opt: 335 Z-score: 266.1 bits: 57.1 E(85289): 4.4e-08
Smith-Waterman score: 337; 31.4% identity (55.8% similar) in 226 aa overlap (40-254:79-294)
10 20 30 40 50 60
pF1KB8 YYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAP-
::: ... :: : . :
NP_055 SFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPS
50 60 70 80 90 100
70 80 90 100 110
pF1KB8 ------VPSQSSVVYHPYGPQPHL---GADTRYMRTWLEPLSGAVSFPSFPAGGRHYALK
. ...: : . :: : . .. . : . : . ::
NP_055 TVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGD----
110 120 130 140 150 160
120 130 140 150 160 170
pF1KB8 PDAYPGRRADC-GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLD
: : : : : ::... :. .: : .: . : .. .:. . ... .
NP_055 PPAEP----PCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKE
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB8 PSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKI
:.. .: .: ::::::::.:.: :::.::.::.:.....: ...:.::::.:::::
NP_055 PAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI
230 240 250 260 270
240 250 260
pF1KB8 WFQNRRMKMKKMNKEKTDKEQS
:::::::: ::.....
NP_055 WFQNRRMKEKKLSRDRLQYFSGNPLL
280 290 300
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 355 init1: 310 opt: 324 Z-score: 257.8 bits: 55.6 E(85289): 1.3e-07
Smith-Waterman score: 350; 34.8% identity (54.0% similar) in 250 aa overlap (29-254:69-303)
10 20 30 40 50
pF1KB8 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAA-----RPSGLVP-DCSDFPS
::: :: . :: :: . ::
NP_005 SSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPS
40 50 60 70 80 90
60 70 80 90 100
pF1KB8 CSFAPKPAVFSTSWA----PVPSQSSVVYHPYGPQPHLGA--DTRYMRTWLEPLSGAVS-
. .: .. ..: :.:. :: : : . : : . .. : . : :
NP_005 AAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSD
100 110 120 130 140 150
110 120 130 140 150
pF1KB8 FPS-------FPAGGRHYALKPDAYPGRRA----DCGPGEGRSYPDYMYGSPGELRDRAP
.:. ::. : : : : : : : : . .. . : : :
NP_005 YPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCR--ETAAAAEEKERRRRP
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB8 QTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFN
.. :::.. : : :.:: . . . :::::::::::: :::.::.:.
NP_005 ESSSSPESS----SGHTEDKAGGSSG---------QRTRKKRCPYTKYQIRELEREFFFS
220 230 240 250 260
220 230 240 250 260
pF1KB8 MYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
.:.....: ...:.::::.::::::::::::: ::.:...
NP_005 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
270 280 290 300 310
260 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:29:15 2016 done: Fri Nov 4 16:29:16 2016
Total Scan time: 5.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]