FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8910, 208 aa
  1>>>pF1KB8910 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6158+/-0.000731; mu= 11.6121+/- 0.044
 mean_var=66.4172+/-13.211, 0's: 0 Z-trim(109.1): 33  B-trim: 57 in 1/50
 Lambda= 0.157374
 statistics sampled from 10594 (10623) to 10594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS8196.1 FADD gene_id:8772|Hs108|chr11           ( 208) 1347 314.2 3.6e-86


>>CCDS8196.1 FADD gene_id:8772|Hs108|chr11                (208 aa)
 initn: 1347 init1: 1347 opt: 1347  Z-score: 1660.5  bits: 314.2 E(32554): 3.6e-86
Smith-Waterman score: 1347; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB8 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEV
              130       140       150       160       170       180

              190       200        
pF1KB8 QQARDLQNRSGAMSPMSWNSDASTSEAS
       ::::::::::::::::::::::::::::
CCDS81 QQARDLQNRSGAMSPMSWNSDASTSEAS
              190       200        




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:00:35 2016 done: Sat Nov  5 20:00:35 2016
 Total Scan time:  2.230 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]