Result of FASTA (omim) for
pF1KB8905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8905, 237 aa
1>>>pF1KB8905 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0261+/-0.000275; mu= 9.6037+/- 0.017
mean_var=164.4013+/-32.603, 0's: 0 Z-trim(123.8): 27 B-trim: 0 in 0/60
Lambda= 0.100028
statistics sampled from 44316 (44348) to 44316 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.52), width: 16
Scan time: 7.070
The best scores are: opt bits E(85289)
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237) 1592 240.4 2.1e-63
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 1592 240.4 2.1e-63
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339) 1592 240.5 2.7e-63
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132) 715 113.6 1.7e-25
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234) 715 113.8 2.6e-25
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 456 76.6 6.2e-14
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 439 74.1 3.2e-13
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 432 73.2 7.1e-13
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383) 432 73.2 7.3e-13
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383) 432 73.2 7.3e-13
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383) 432 73.2 7.3e-13
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 432 73.2 7.5e-13
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 287 51.9 8e-07
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 287 51.9 8e-07
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 287 51.9 8e-07
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 278 50.6 1.9e-06
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 278 50.6 1.9e-06
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162) 278 50.6 1.9e-06
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156) 276 50.3 2.3e-06
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 276 50.3 2.3e-06
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156) 276 50.3 2.3e-06
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 264 48.5 7e-06
>>XP_011535104 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_005267766 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_011535106 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_005267767 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_005267765 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_011535107 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>NP_006168 (OMIM: 162080,613750) neural retina-specific (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1259.3 bits: 240.4 E(85289): 2.1e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>XP_011535103 (OMIM: 162080,613750) PREDICTED: neural r (339 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1257.3 bits: 240.5 E(85289): 2.7e-63
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:103-339)
10 20 30
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEG
::::::::::::::::::::::::::::::
XP_011 LAEAESRRAPLAAPRGRAQRKVHSSQPSSRMALPPSPLAMEYVNDFDLMKFEVKREPSEG
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB8 RPGPPTASLGSTPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPGPPTASLGSTPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGL
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB8 SPEEAMELLQGQGPVPVDGPHGYYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPEEAMELLQGQGPVPVDGPHGYYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLR
200 210 220 230 240 250
160 170 180 190 200 210
pF1KB8 GCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLAR
260 270 280 290 300 310
220 230
pF1KB8 ERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::
XP_011 ERDLYKARCDRLTSSGPGSGDPSHLFL
320 330
>>XP_016876839 (OMIM: 162080,613750) PREDICTED: neural r (132 aa)
initn: 738 init1: 715 opt: 715 Z-score: 578.5 bits: 113.6 E(85289): 1.7e-25
Smith-Waterman score: 715; 99.1% identity (100.0% similar) in 111 aa overlap (127-237:22-132)
100 110 120 130 140 150
pF1KB8 ELLQGQGPVPVDGPHGYYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDE
.:::::::::::::::::::::::::::::
XP_016 MALPPSPLAMEYVNDFDLMKFELAERFSDAALVSMSVRELNRQLRGCGRDE
10 20 30 40 50
160 170 180 190 200 210
pF1KB8 ALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYK
60 70 80 90 100 110
220 230
pF1KB8 ARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::
XP_016 ARCDRLTSSGPGSGDPSHLFL
120 130
>>XP_011535108 (OMIM: 162080,613750) PREDICTED: neural r (234 aa)
initn: 744 init1: 715 opt: 715 Z-score: 575.4 bits: 113.8 E(85289): 2.6e-25
Smith-Waterman score: 721; 61.4% identity (71.8% similar) in 220 aa overlap (22-237:35-234)
10 20 30 40
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREP-SEGR-PGPPTASLGSTPYSS--V
::. : : :: :. : . :. .::
XP_011 GSAERSEEREEVLRVADRDRAVRGERGREGEVQAETRSTGRLPSQETRGAGGWTHSSRPC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPV
:: : . : .. .:. : : : :... ... : : : : :.
XP_011 PPPPRM---GNLAEAESRRAPLAAPRGRA--QRKVHSSQ-----PSSRMAL----PPSPL
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 DGPHGYYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTL
. .. .. .::::::::::::::::::::::::::::::::::::::::
XP_011 AMEY------VNDFDLMKFELAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTL
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 KNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGP
170 180 190 200 210 220
230
pF1KB8 GSGDPSHLFL
::::::::::
XP_011 GSGDPSHLFL
230
237 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:45:56 2016 done: Sat Nov 5 00:45:57 2016
Total Scan time: 7.070 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]