Result of FASTA (ccds) for
pF1KB8905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8905, 237 aa
1>>>pF1KB8905 237 - 237 aa - 237 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0816+/-0.000684; mu= 9.1654+/- 0.042
mean_var=155.8645+/-30.964, 0's: 0 Z-trim(116.5): 12 B-trim: 0 in 0/54
Lambda= 0.102731
statistics sampled from 17085 (17095) to 17085 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.525), width: 16
Scan time: 2.790
The best scores are: opt bits E(32554)
CCDS9608.1 NRL gene_id:4901|Hs108|chr14 ( 237) 1592 246.4 1.2e-65
CCDS34955.1 MAFA gene_id:389692|Hs108|chr8 ( 353) 456 78.2 7.9e-15
CCDS13311.1 MAFB gene_id:9935|Hs108|chr20 ( 323) 439 75.6 4.3e-14
CCDS42198.1 MAF gene_id:4094|Hs108|chr16 ( 373) 432 74.6 9.7e-14
CCDS10928.1 MAF gene_id:4094|Hs108|chr16 ( 403) 432 74.7 1e-13
>>CCDS9608.1 NRL gene_id:4901|Hs108|chr14 (237 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1291.8 bits: 246.4 E(32554): 1.2e-65
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKR
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHLFL
190 200 210 220 230
>>CCDS34955.1 MAFA gene_id:389692|Hs108|chr8 (353 aa)
initn: 686 init1: 430 opt: 456 Z-score: 379.7 bits: 78.2 E(32554): 7.9e-15
Smith-Waterman score: 531; 42.2% identity (63.7% similar) in 256 aa overlap (27-229:73-325)
10 20 30 40 50
pF1KB8 MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEP
:. : : .. ::. ...: :. . :
CCDS34 HRLPPGSLSSTPLSTPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPS-GGP
50 60 70 80 90 100
60 70 80 90 100
pF1KB8 GMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQG----------PVP
: ::.: : .:.::.:::.. :..:. :::.:.::.:.: : :.: :.
CCDS34 GAVGGTSG-KPALEDLYWMSGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAA
110 120 130 140 150
110 120
pF1KB8 VD------GP----------------HG-------------------YYPGSPEETGA-Q
. :: :: .. :. . :: .
CCDS34 AAAYEAFRGPGFAGGGGADDMGAGHHHGAHHAAHHHHAAHHHHHHHHHHGGAGHGGGAGH
160 170 180 190 200 210
130 140 150 160 170 180
pF1KB8 HVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQR
::.: ::::: ::::::::::::::: ...:..::::.:::::::::::.:: ::.:::
CCDS34 HVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQR
220 230 240 250 260 270
190 200 210 220 230
pF1KB8 RGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTS-SGPGSGDPSHLFL
. ::.:. .: .:.. :. ::.:::.:::::: . ..:.. .::::
CCDS34 HILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQ
280 290 300 310 320 330
CCDS34 AGPGGAKGTADFFL
340 350
>>CCDS13311.1 MAFB gene_id:9935|Hs108|chr20 (323 aa)
initn: 782 init1: 423 opt: 439 Z-score: 366.5 bits: 75.6 E(32554): 4.3e-14
Smith-Waterman score: 501; 41.0% identity (58.2% similar) in 261 aa overlap (33-226:53-305)
10 20 30 40 50 60
pF1KB8 LPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVGAT
: ... ::: :::: ::.:: : :
CCDS13 DFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPLSTPCSSVPSSPSFS-P-----T
30 40 50 60 70
70 80 90 100
pF1KB8 EGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVP-----VDG--------
: . ::.:::.:. ::.. :::.:.::.:.: : :. ::: :.
CCDS13 E-QKTHLEDLYWMASNYQQMNP-EALNLTPEDAVEALIGSHPVPQPLQSFDSFRGAHHHH
80 90 100 110 120 130
110 120
pF1KB8 ------PHGYYPGS-----------------------PEETGAQHVQ-------------
:: :::. : ..:. .:
CCDS13 HHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHA
140 150 160 170 180 190
130 140 150 160 170
pF1KB8 ------------LAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQA
. .:::: :::::::::::.::: .::..::::.:::::::::::.
CCDS13 TASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQS
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB8 CRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDPSHL
:: ::.::.. :: :...: :.. :. ::.::::::: ::..:..:..::
CCDS13 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGFREAGSTSD
260 270 280 290 300 310
pF1KB8 FL
CCDS13 SPSSPEFFL
320
>>CCDS42198.1 MAF gene_id:4094|Hs108|chr16 (373 aa)
initn: 730 init1: 413 opt: 432 Z-score: 360.1 bits: 74.6 E(32554): 9.7e-14
Smith-Waterman score: 432; 50.7% identity (71.5% similar) in 144 aa overlap (83-226:212-355)
60 70 80 90 100 110
pF1KB8 FSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHG
::: : : .: : : : : :
CCDS42 HHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAG
190 200 210 220 230 240
120 130 140 150 160 170
pF1KB8 YYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGY
. . .: ... .:::: ::.:::::::::::: ...:..::::.:::::::::
CCDS42 AGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRGY
250 260 270 280 290 300
180 190 200 210 220 230
pF1KB8 AQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDP
::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.:::
CCDS42 AQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENGS
310 320 330 340 350 360
pF1KB8 SHLFL
CCDS42 SSDNPSSPEFFM
370
>>CCDS10928.1 MAF gene_id:4094|Hs108|chr16 (403 aa)
initn: 730 init1: 413 opt: 432 Z-score: 359.7 bits: 74.7 E(32554): 1e-13
Smith-Waterman score: 432; 50.7% identity (71.5% similar) in 144 aa overlap (83-226:212-355)
60 70 80 90 100 110
pF1KB8 FSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHG
::: : : .: : : : : :
CCDS10 HHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAG
190 200 210 220 230 240
120 130 140 150 160 170
pF1KB8 YYPGSPEETGAQHVQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGY
. . .: ... .:::: ::.:::::::::::: ...:..::::.:::::::::
CCDS10 AGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRGY
250 260 270 280 290 300
180 190 200 210 220 230
pF1KB8 AQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGSGDP
::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.:::
CCDS10 AQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENGS
310 320 330 340 350 360
pF1KB8 SHLFL
CCDS10 SSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
370 380 390 400
237 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:45:55 2016 done: Sat Nov 5 00:45:56 2016
Total Scan time: 2.790 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]