Result of FASTA (omim) for
pF1KB8897
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8897, 224 aa
1>>>pF1KB8897 224 - 224 aa - 224 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7643+/-0.0003; mu= 9.5835+/- 0.019
mean_var=153.0605+/-31.065, 0's: 0 Z-trim(122.2): 238 B-trim: 40 in 1/55
Lambda= 0.103668
statistics sampled from 39674 (39943) to 39674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.468), width: 16
Scan time: 7.080
The best scores are: opt bits E(85289)
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 1567 245.0 7.6e-65
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 1567 245.0 7.6e-65
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 1567 245.0 7.6e-65
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 1567 245.1 9.1e-65
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 632 105.2 9.8e-23
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 589 98.7 8.4e-21
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 497 84.8 8.7e-17
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 484 83.1 4.8e-16
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 480 82.5 7.5e-16
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 474 81.6 1.4e-15
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 474 81.6 1.4e-15
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 472 81.2 1.5e-15
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 460 79.5 6e-15
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 457 79.0 7.8e-15
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 452 78.3 1.3e-14
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 439 76.3 4.9e-14
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 439 76.3 4.9e-14
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 436 75.9 6.4e-14
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 436 75.9 6.7e-14
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 437 76.1 7.3e-14
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 422 73.7 2.7e-13
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 396 70.0 4.8e-12
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 394 69.7 5.9e-12
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 365 64.9 5.9e-11
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 338 61.5 2.6e-09
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 338 61.5 2.6e-09
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 330 60.1 4.6e-09
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 313 57.7 3.5e-08
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 313 57.7 3.5e-08
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 313 57.7 3.5e-08
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 313 57.7 3.5e-08
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 313 57.7 3.5e-08
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 313 57.7 3.5e-08
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 313 57.7 3.5e-08
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 309 56.9 3.9e-08
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 309 57.0 4.2e-08
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 305 56.3 5.6e-08
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 307 56.8 6.2e-08
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 300 55.6 9.6e-08
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 300 55.7 1.2e-07
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 295 55.0 2.1e-07
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 292 54.5 2.8e-07
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 287 53.7 4.2e-07
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 285 53.4 5.3e-07
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 1567 init1: 1567 opt: 1567 Z-score: 1285.2 bits: 245.0 E(85289): 7.6e-65
Smith-Waterman score: 1567; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
130 140 150 160 170 180
190 200 210 220
pF1KB8 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
::::::::::::::::::::::::::::::::::::::::::::
XP_005 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
190 200 210 220
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 1567 init1: 1567 opt: 1567 Z-score: 1285.2 bits: 245.0 E(85289): 7.6e-65
Smith-Waterman score: 1567; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
130 140 150 160 170 180
190 200 210 220
pF1KB8 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
::::::::::::::::::::::::::::::::::::::::::::
XP_005 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
190 200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 1567 init1: 1567 opt: 1567 Z-score: 1285.2 bits: 245.0 E(85289): 7.6e-65
Smith-Waterman score: 1567; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
130 140 150 160 170 180
190 200 210 220
pF1KB8 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
::::::::::::::::::::::::::::::::::::::::::::
NP_061 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
190 200 210 220
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 1567 init1: 1567 opt: 1567 Z-score: 1283.8 bits: 245.1 E(85289): 9.1e-65
Smith-Waterman score: 1567; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:65-288)
10 20 30
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSS
::::::::::::::::::::::::::::::
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSS
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACAL
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB8 SGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGR
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB8 QTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
220 230 240 250 260 270
220
pF1KB8 SQLSAEEEEEKQAE
::::::::::::::
XP_011 SQLSAEEEEEKQAE
280
>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo (235 aa)
initn: 607 init1: 486 opt: 632 Z-score: 529.2 bits: 105.2 E(85289): 9.8e-23
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-224:1-229)
10 20 30 40 50 60
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
:.:::.: .. ::.::. : .. : :..: ::.::. . :: . .:.. ..: : :
NP_004 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
10 20 30 40 50
70 80 90 100 110
pF1KB8 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
. .. . .: ::: . .::.::. ::. .. : ... ::: .: :.:
NP_004 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHN--TQTSIAQDFSSEQGRT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
..:: : .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
NP_004 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE
::::.::::::::::::::::::::::::.: : :..:...::.....:
NP_004 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
180 190 200 210 220 230
NP_004 KQKE
>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo (233 aa)
initn: 780 init1: 551 opt: 589 Z-score: 494.4 bits: 98.7 E(85289): 8.4e-21
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-224:1-233)
10 20 30 40 50 60
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
::::::: ::: .: :::.:::::::::..:: : :: .:: :: . :: ... .:
NP_076 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
10 20 30 40 50
70 80 90 100
pF1KB8 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ-PP-----FHPEPR-KSDCA-
... . .::. .:: : :: .:. :. . ::. .: : : :: . : : .
NP_076 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
: :.. : ..: ..:::::::::::: .. .: :::::::::::::::::::::.:
NP_076 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
NP_076 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
180 190 200 210 220 230
>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo (153 aa)
initn: 531 init1: 486 opt: 497 Z-score: 422.4 bits: 84.8 E(85289): 8.7e-17
Smith-Waterman score: 500; 60.9% identity (81.2% similar) in 133 aa overlap (105-224:15-147)
80 90 100 110 120 130
pF1KB8 GPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET--EEQKCSTPVYPWM
... ::: .: :.: ..:: : .::::
NP_710 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWM
10 20 30 40
140 150 160 170 180 190
pF1KB8 QRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIK
::::: .. ..: . ::::: :.::::::::::::.:::::::::::::.::::::::::
NP_710 QRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIK
50 60 70 80 90 100
200 210 220
pF1KB8 IWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE
::::::::::::::.: : :..:...::.....:
NP_710 IWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
110 120 130 140 150
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 440 init1: 371 opt: 484 Z-score: 409.1 bits: 83.1 E(85289): 4.8e-16
Smith-Waterman score: 484; 44.7% identity (58.0% similar) in 226 aa overlap (1-207:3-215)
10 20 30 40
pF1KB8 MSSYFVNST-----FPVTLASGQESFLGQL--PLYSSGY--AD--PLRHYPAP-YGPG
::::.::: :: : ..::. :..: :: : :: : .:
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEP---
: .: . .: : : : ..: . ::. : : :: : :
NP_055 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPG------EPCP---APPAPPPAPLPGAR
70 80 90 100 110
110 120 130 140 150
pF1KB8 --RKSDCAQDKSVFGETEEQKCSTPVYPWMQRM--NSCNSSSFGPSGRRGRQTYTRYQTL
.:: : : : . .: . :::::... :: : . : .:.: .::: :.:
NP_055 AYSQSDPKQPPS--GTALKQP--AVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVL
120 130 140 150 160
160 170 180 190 200 210
pF1KB8 ELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEE
:::::::.::::::::::::::.:::.:::::::::::::::::. ::
NP_055 ELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSS
170 180 190 200 210 220
220
pF1KB8 EKQAE
NP_055 SSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 528 init1: 448 opt: 480 Z-score: 405.5 bits: 82.5 E(85289): 7.5e-16
Smith-Waterman score: 482; 45.5% identity (67.4% similar) in 187 aa overlap (30-215:95-264)
10 20 30 40 50
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYP-APYGPGPGQDKGFATSSY
: ::: : . .:.::.:. . ..
NP_061 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPL---PCSAVAPSPGSDSHHGGKNS
70 80 90 100 110 120
60 70 80 90 100 110
pF1KB8 YPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGET
..: : : : . .:.. . :::.:. : : ... .. : .
NP_061 LSNSSG-----ASADAGST--HISSREGVGTASGAEEDAPASSE--QASAQSEPSPAPPA
130 140 150 160 170
120 130 140 150 160 170
pF1KB8 EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE
. : .::::.... ... :: :.:.: .::::::::::::::.:::::::::::
NP_061 QPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE
180 190 200 210 220
180 190 200 210 220
pF1KB8 IAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
:::::::.:::::::::::::::::..:: : :. .:
NP_061 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
230 240 250 260 270
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 388 init1: 356 opt: 474 Z-score: 400.8 bits: 81.6 E(85289): 1.4e-15
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (1-215:8-225)
10 20 30 40
pF1KB8 MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
:.: ... :: .:.:.. . : : ::. .. :: : :
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
10 20 30 40 50
50 60 70 80 90
pF1KB8 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
:. .. .. .: : :.. : .::: : ... : : : ::::. .:
NP_705 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
: : :.: . .: . :::::.... . : . : .:.: .::: :
NP_705 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
120 130 140 150 160
160 170 180 190 200 210
pF1KB8 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
.:::::::::::::::::::::::.:::.:::::::::::::::::. .: ... ::
NP_705 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
170 180 190 200 210 220
220
pF1KB8 EEEKQAE
NP_705 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
224 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:24:39 2016 done: Fri Nov 4 16:24:40 2016
Total Scan time: 7.080 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]