FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8894, 217 aa
  1>>>pF1KB8894 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4450+/-0.000688; mu= 11.7161+/- 0.042
 mean_var=135.4540+/-27.427, 0's: 0 Z-trim(115.2): 49  B-trim: 0 in 0/52
 Lambda= 0.110199
 statistics sampled from 15721 (15770) to 15721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.484), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS3819.1 HAND2 gene_id:9464|Hs108|chr4           ( 217) 1471 243.9 5.8e-65
CCDS4327.1 HAND1 gene_id:9421|Hs108|chr5           ( 215)  689 119.6 1.5e-27


>>CCDS3819.1 HAND2 gene_id:9464|Hs108|chr4                (217 aa)
 initn: 1471 init1: 1471 opt: 1471  Z-score: 1279.7  bits: 243.9 E(32554): 5.8e-65
Smith-Waterman score: 1471; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB8 MSLVGGFPHHPVVHHEGYPFAAAAAAAAAAAASRCSHEENPYFHGWLIGHPEMSPPDYSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSLVGGFPHHPVVHHEGYPFAAAAAAAAAAAASRCSHEENPYFHGWLIGHPEMSPPDYSM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKKTDVKEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKKTDVKEEK
              130       140       150       160       170       180

              190       200       210       
pF1KB8 RKKELNEILKSTVSSNDKKTKGRTGWPQHVWALELKQ
       :::::::::::::::::::::::::::::::::::::
CCDS38 RKKELNEILKSTVSSNDKKTKGRTGWPQHVWALELKQ
              190       200       210       

>>CCDS4327.1 HAND1 gene_id:9421|Hs108|chr5                (215 aa)
 initn: 678 init1: 386 opt: 689  Z-score: 607.8  bits: 119.6 E(32554): 1.5e-27
Smith-Waterman score: 689; 54.2% identity (73.6% similar) in 227 aa overlap (1-217:1-215)

               10        20           30        40        50       
pF1KB8 MSLVGGFPHHPVVHHEGYPFAAAAAAAAA---AAASRCSHEENPYFHGWLIGHPEMSPPD
       :.:::.. ::   ::. .:  :          . :::: :.: :::..::.. :  . ::
CCDS43 MNLVGSYAHH---HHHHHPHPAHPMLHEPFLFGPASRC-HQERPYFQSWLLS-PADAAPD
               10           20        30         40         50     

        60        70        80            90       100       110   
pF1KB8 YSMALSYSPEYASGAAGLDHSHYG-GVPPGAGP---PGLGGPRPVKRRGTANRKERRRTQ
       .  .   .:  :..::.   . ::  . :: .:    .::: :  .:.:.. .::::::.
CCDS43 FPAG---GPPPAAAAAA---TAYGPDARPGQSPGRLEALGG-RLGRRKGSGPKKERRRTE
             60           70        80        90        100        

           120       130       140       150       160       170   
pF1KB8 SINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKK
       ::::::::::::::::::::::::::::::::::::::::.:::: :.:. ::::::.::
CCDS43 SINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGDPEAFKAELKK
      110       120       130       140       150       160        

            180         190       200       210       
pF1KB8 TDV-KEEKRKKEL--NEILKSTVSSNDKKTKGRTGWPQHVWALELKQ
       .:  .: :::.::  .: .  ...  .:. ::::::::.::::::.:
CCDS43 ADGGRESKRKRELQQHEGFPPALGPVEKRIKGRTGWPQQVWALELNQ
      170       180       190       200       210     




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:23:01 2016 done: Fri Nov  4 16:23:01 2016
 Total Scan time:  2.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]