FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8892, 215 aa
  1>>>pF1KB8892 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4403+/-0.000718; mu= 7.3870+/- 0.044
 mean_var=178.0813+/-35.809, 0's: 0 Z-trim(116.6): 38  B-trim: 83 in 1/51
 Lambda= 0.096109
 statistics sampled from 17204 (17242) to 17204 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS4327.1 HAND1 gene_id:9421|Hs108|chr5           ( 215) 1507 219.6 1.1e-57
CCDS3819.1 HAND2 gene_id:9464|Hs108|chr4           ( 217)  689 106.2 1.6e-23


>>CCDS4327.1 HAND1 gene_id:9421|Hs108|chr5                (215 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 1148.8  bits: 219.6 E(32554): 1.1e-57
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB8 MNLVGSYAHHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MNLVGSYAHHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPPAAAAAATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELREC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPPAAAAAATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELREC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGDPEAFKAELKKADGGRESKRKRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGDPEAFKAELKKADGGRESKRKRE
              130       140       150       160       170       180

              190       200       210     
pF1KB8 LQQHEGFPPALGPVEKRIKGRTGWPQQVWALELNQ
       :::::::::::::::::::::::::::::::::::
CCDS43 LQQHEGFPPALGPVEKRIKGRTGWPQQVWALELNQ
              190       200       210     

>>CCDS3819.1 HAND2 gene_id:9464|Hs108|chr4                (217 aa)
 initn: 678 init1: 386 opt: 689  Z-score: 535.7  bits: 106.2 E(32554): 1.6e-23
Smith-Waterman score: 689; 54.2% identity (73.6% similar) in 227 aa overlap (1-215:1-217)

               10           20        30         40         50     
pF1KB8 MNLVGSYAHH---HHHHHPHPAHPMLHEPFLFGPASRC-HQERPYFQSWLLS-PADAAPD
       :.:::.. ::   ::. .:  :          . :::: :.: :::..::.. :  . ::
CCDS38 MSLVGGFPHHPVVHHEGYPFAAAAAAAAA---AAASRCSHEENPYFHGWLIGHPEMSPPD
               10        20           30        40        50       

             60           70        80        90        100        
pF1KB8 FPAG---GPPPAAAAAA---TAYGPDARPGQSPGRLEALGG-RLGRRKGSGPKKERRRTE
       .  .   .:  :..::.   . ::  . :: .:    .::: :  .:.:.. .::::::.
CCDS38 YSMALSYSPEYASGAAGLDHSHYG-GVPPGAGP---PGLGGPRPVKRRGTANRKERRRTQ
        60        70        80            90       100       110   

      110       120       130       140       150       160        
pF1KB8 SINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGDPEAFKAELKK
       ::::::::::::::::::::::::::::::::::::::::.:::: :.:. ::::::.::
CCDS38 SINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKK
           120       130       140       150       160       170   

      170       180       190       200       210     
pF1KB8 ADGGRESKRKRELQQHEGFPPALGPVEKRIKGRTGWPQQVWALELNQ
       .:  .: :::.::  .: .  ...  .:. ::::::::.::::::.:
CCDS38 TDV-KEEKRKKEL--NEILKSTVSSNDKKTKGRTGWPQHVWALELKQ
            180         190       200       210       




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:20:08 2016 done: Fri Nov  4 20:20:08 2016
 Total Scan time:  2.550 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]