FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8890, 208 aa
  1>>>pF1KB8890 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4674+/-0.000823; mu= 11.6460+/- 0.049
 mean_var=55.5472+/-11.088, 0's: 0 Z-trim(105.6): 9  B-trim: 6 in 1/49
 Lambda= 0.172085
 statistics sampled from 8509 (8510) to 8509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS322.1 MED18 gene_id:54797|Hs108|chr1           ( 208) 1388 352.6 9.9e-98


>>CCDS322.1 MED18 gene_id:54797|Hs108|chr1                (208 aa)
 initn: 1388 init1: 1388 opt: 1388  Z-score: 1868.0  bits: 352.6 E(32554): 9.9e-98
Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB8 MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KGQQASPFVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGQQASPFVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQD
              130       140       150       160       170       180

              190       200        
pF1KB8 MVSDDMKNFAEQLKPLVHLEKIDPKRLM
       ::::::::::::::::::::::::::::
CCDS32 MVSDDMKNFAEQLKPLVHLEKIDPKRLM
              190       200        




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:21:58 2016 done: Fri Nov  4 16:21:58 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]