FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8887, 198 aa
  1>>>pF1KB8887 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5440+/-0.000662; mu= 10.5414+/- 0.040
 mean_var=139.6975+/-29.260, 0's: 0 Z-trim(115.9): 173  B-trim: 922 in 1/51
 Lambda= 0.108513
 statistics sampled from 16244 (16445) to 16244 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.505), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS62938.1 LBX2 gene_id:85474|Hs108|chr2          ( 198) 1330 218.2 2.6e-57
CCDS33228.1 LBX2 gene_id:85474|Hs108|chr2          ( 194)  880 147.8 4.1e-36
CCDS31270.1 LBX1 gene_id:10660|Hs108|chr10         ( 281)  515 90.8 8.5e-19


>>CCDS62938.1 LBX2 gene_id:85474|Hs108|chr2               (198 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1142.4  bits: 218.2 E(32554): 2.6e-57
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB8 MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCLGP
              130       140       150       160       170       180

              190        
pF1KB8 AGPDSRPHLSDEEIQVDD
       ::::::::::::::::::
CCDS62 AGPDSRPHLSDEEIQVDD
              190        

>>CCDS33228.1 LBX2 gene_id:85474|Hs108|chr2               (194 aa)
 initn: 868 init1: 868 opt: 880  Z-score: 761.8  bits: 147.8 E(32554): 4.1e-36
Smith-Waterman score: 880; 80.3% identity (86.7% similar) in 173 aa overlap (26-198:28-194)

                 10        20        30        40        50        
pF1KB8   MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPTSPLCALEELTSKTFRG
                                  : : : :  : .       ::   . .:..   
CCDS33 MGKRTSLEVSLGELGGEKCRGGRRSFPPLAASRPARPGGWRWARRDLC---KTASRAEN-
               10        20        30        40           50       

       60        70        80        90       100       110        
pF1KB8 LDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGL
        ...: .:.. :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 -NSQACRPQR-RAGPDALGPGPFGRKRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGL
          60         70        80        90       100       110    

      120       130       140       150       160       170        
pF1KB8 ATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVLCSLALPEGAPDPGLCL
          120       130       140       150       160       170    

      180       190        
pF1KB8 GPAGPDSRPHLSDEEIQVDD
       ::::::::::::::::::::
CCDS33 GPAGPDSRPHLSDEEIQVDD
          180       190    

>>CCDS31270.1 LBX1 gene_id:10660|Hs108|chr10              (281 aa)
 initn: 591 init1: 513 opt: 515  Z-score: 450.9  bits: 90.8 E(32554): 8.5e-19
Smith-Waterman score: 515; 57.8% identity (76.2% similar) in 147 aa overlap (13-159:59-199)

                                 10        20        30        40  
pF1KB8                   MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPT
                                     ::. ::  :   .: :  :  : .     :
CCDS31 SNKPLTPFSIEDILNKPSVRRSYSLCGAAHLLAAADKHAQGGLPLAGRA-LLSQ-----T
       30        40        50        60        70         80       

             50        60        70        80        90       100  
pF1KB8 SPLCALEELTSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELER
       :::::::::.::::.::.. .:: .::: :   .:     .:::::::::: .:. :::.
CCDS31 SPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEK
             90       100       110       120       130       140  

            110       120       130       140       150       160  
pF1KB8 RFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSPEVL
       ::..::::.:..:: .: .:::.::::.:::::::::::::.:::.::: : . :.:   
CCDS31 RFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQ
            150       160       170       180       190       200  

            170       180       190                                
pF1KB8 CSLALPEGAPDPGLCLGPAGPDSRPHLSDEEIQVDD                        
                                                                   
CCDS31 MDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPASPLTDQP
            210       220       230       240       250       260  




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:21:22 2016 done: Fri Nov  4 16:21:23 2016
 Total Scan time:  2.480 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]