FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8885, 193 aa
  1>>>pF1KB8885 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8769+/-0.000786; mu= -1.0838+/- 0.048
 mean_var=183.9662+/-37.906, 0's: 0 Z-trim(115.7): 6  B-trim: 447 in 1/52
 Lambda= 0.094560
 statistics sampled from 16220 (16226) to 16220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.498), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS14419.1 CITED1 gene_id:4435|Hs108|chrX         ( 193) 1281 185.6 1.7e-47
CCDS48136.1 CITED1 gene_id:4435|Hs108|chrX         ( 219) 1281 185.6 1.9e-47


>>CCDS14419.1 CITED1 gene_id:4435|Hs108|chrX              (193 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 966.2  bits: 185.6 E(32554): 1.7e-47
Smith-Waterman score: 1281; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB8 MPTTSRPALDVKGGTSPAKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPTTSRPALDVKGGTSPAKEDANQEMSSVAYSNLAVKDRKAVAILHYPGVASNGTKASGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLASMQLQKLNSQYQGMAAATPGQPGEAGP
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS14 PTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLASMHLQKLNSQYQGMAAATPGQPGEAGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LQNWDFGAQAGGAESLSPSAGAQSPAIIDSDPVDEEVLMSLVVELGLDRANELPELWLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQNWDFGAQAGGAESLSPSAGAQSPAIIDSDPVDEEVLMSLVVELGLDRANELPELWLGQ
              130       140       150       160       170       180

              190   
pF1KB8 NEFDFTADFPSSC
       :::::::::::::
CCDS14 NEFDFTADFPSSC
              190   

>>CCDS48136.1 CITED1 gene_id:4435|Hs108|chrX              (219 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 965.4  bits: 185.6 E(32554): 1.9e-47
Smith-Waterman score: 1281; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:27-219)

                                         10        20        30    
pF1KB8                           MPTTSRPALDVKGGTSPAKEDANQEMSSVAYSNL
                                 ::::::::::::::::::::::::::::::::::
CCDS48 MEPSAQQLQLAASLPANLSNFCQGSEMPTTSRPALDVKGGTSPAKEDANQEMSSVAYSNL
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KB8 AVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AVKDRKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLAS
               70        80        90       100       110       120

          100       110       120       130       140       150    
pF1KB8 MQLQKLNSQYQGMAAATPGQPGEAGPLQNWDFGAQAGGAESLSPSAGAQSPAIIDSDPVD
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MHLQKLNSQYQGMAAATPGQPGEAGPLQNWDFGAQAGGAESLSPSAGAQSPAIIDSDPVD
              130       140       150       160       170       180

          160       170       180       190   
pF1KB8 EEVLMSLVVELGLDRANELPELWLGQNEFDFTADFPSSC
       :::::::::::::::::::::::::::::::::::::::
CCDS48 EEVLMSLVVELGLDRANELPELWLGQNEFDFTADFPSSC
              190       200       210         




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:19:46 2016 done: Fri Nov  4 16:19:47 2016
 Total Scan time:  2.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]