FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8881, 179 aa
  1>>>pF1KB8881 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6793+/-0.000728; mu= 11.7707+/- 0.044
 mean_var=84.0242+/-16.904, 0's: 0 Z-trim(111.1): 49  B-trim: 286 in 1/51
 Lambda= 0.139917
 statistics sampled from 12075 (12127) to 12075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.373), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS5167.1 TCF21 gene_id:6943|Hs108|chr6           ( 179) 1165 244.1 3.5e-65
CCDS43746.1 MSC gene_id:9242|Hs108|chr8            ( 206)  635 137.1 6.3e-33


>>CCDS5167.1 TCF21 gene_id:6943|Hs108|chr6                (179 aa)
 initn: 1165 init1: 1165 opt: 1165  Z-score: 1283.7  bits: 244.1 E(32554): 3.5e-65
Smith-Waterman score: 1165; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB8 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB8 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
              130       140       150       160       170         

>>CCDS43746.1 MSC gene_id:9242|Hs108|chr8                 (206 aa)
 initn: 654 init1: 614 opt: 635  Z-score: 704.6  bits: 137.1 E(32554): 6.3e-33
Smith-Waterman score: 635; 71.5% identity (83.2% similar) in 137 aa overlap (44-178:70-206)

            20        30        40        50         60         70 
pF1KB8 EVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQ-KGRGGLGKRRKAPTKKS-PLSG
                                     :.   :.  : :: :    .  ::  : .:
CCDS43 SPSDNSSAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKG
      40        50        60        70        80        90         

              80        90       100       110       120       130 
pF1KB8 VSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHL
        . : :: :::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS43 SAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHL
     100       110       120       130       140       150         

             140       150       160       170         
pF1KB8 RQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
       ::.: .:.:::::.:::::::::.:.:.:.:: ::: .:.::::::: 
CCDS43 RQLLQEDRYENGYVHPVNLTWPFVVSGRPDSDTKEVSAANRLCGTTA 
     160       170       180       190       200       




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:19:12 2016 done: Fri Nov  4 16:19:12 2016
 Total Scan time:  2.080 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]