FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8879, 173 aa
  1>>>pF1KB8879 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6980+/-0.000685; mu= 9.1096+/- 0.041
 mean_var=154.4959+/-31.561, 0's: 0 Z-trim(117.0): 2  B-trim: 717 in 1/50
 Lambda= 0.103185
 statistics sampled from 17641 (17642) to 17641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.542), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS6511.2 CDKN2A gene_id:1029|Hs108|chr9          ( 132)  941 150.1   5e-37


>>CCDS6511.2 CDKN2A gene_id:1029|Hs108|chr9               (132 aa)
 initn: 941 init1: 941 opt: 941  Z-score: 778.2  bits: 150.1 E(32554): 5e-37
Smith-Waterman score: 941; 100.0% identity (100.0% similar) in 132 aa overlap (42-173:1-132)

              20        30        40        50        60        70 
pF1KB8 QLRGQEWRCSPLVPKGGAAAAELGPGGGENMVRRFLVTLRIRRACGPPRVRVFVVHIPRL
                                     ::::::::::::::::::::::::::::::
CCDS65                               MVRRFLVTLRIRRACGPPRVRVFVVHIPRL
                                             10        20        30

              80        90       100       110       120       130 
pF1KB8 TGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLRRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLRRPR
               40        50        60        70        80        90

             140       150       160       170   
pF1KB8 HSHPTRARRCPGGLPGHAGGAAPGRGAAGRARCLGPSARGPG
       ::::::::::::::::::::::::::::::::::::::::::
CCDS65 HSHPTRARRCPGGLPGHAGGAAPGRGAAGRARCLGPSARGPG
              100       110       120       130  




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:18:04 2016 done: Fri Nov  4 16:18:05 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]