Result of FASTA (omim) for
pF1KB8878
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8878, 169 aa
1>>>pF1KB8878 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2452+/-0.000294; mu= 1.7251+/- 0.019
mean_var=191.4641+/-36.280, 0's: 0 Z-trim(124.1): 8 B-trim: 0 in 0/61
Lambda= 0.092690
statistics sampled from 45194 (45205) to 45194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.53), width: 16
Scan time: 6.910
The best scores are: opt bits E(85289)
NP_004074 (OMIM: 126337,613488) DNA damage-inducib ( 169) 1090 156.4 2e-38
NP_001181986 (OMIM: 126337,613488) DNA damage-indu ( 169) 1090 156.4 2e-38
NP_001181985 (OMIM: 126337,613488) DNA damage-indu ( 192) 1090 156.5 2.2e-38
NP_001181983 (OMIM: 126337,613488) DNA damage-indu ( 192) 1090 156.5 2.2e-38
NP_001181982 (OMIM: 126337,613488) DNA damage-indu ( 192) 1090 156.5 2.2e-38
NP_001181984 (OMIM: 126337,613488) DNA damage-indu ( 192) 1090 156.5 2.2e-38
>>NP_004074 (OMIM: 126337,613488) DNA damage-inducible t (169 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.9 bits: 156.4 E(85289): 2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
70 80 90 100 110 120
130 140 150 160
pF1KB8 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
130 140 150 160
>>NP_001181986 (OMIM: 126337,613488) DNA damage-inducibl (169 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.9 bits: 156.4 E(85289): 2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
70 80 90 100 110 120
130 140 150 160
pF1KB8 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
130 140 150 160
>>NP_001181985 (OMIM: 126337,613488) DNA damage-inducibl (192 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.1 bits: 156.5 E(85289): 2.2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:24-192)
10 20 30
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
:::::::::::::::::::::::::::::::::::::
NP_001 MELVPATPHYPADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
130 140 150 160 170 180
160
pF1KB8 ALIDRMVNLHQA
::::::::::::
NP_001 ALIDRMVNLHQA
190
>>NP_001181983 (OMIM: 126337,613488) DNA damage-inducibl (192 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.1 bits: 156.5 E(85289): 2.2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:24-192)
10 20 30
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
:::::::::::::::::::::::::::::::::::::
NP_001 MELVPATPHYPADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
130 140 150 160 170 180
160
pF1KB8 ALIDRMVNLHQA
::::::::::::
NP_001 ALIDRMVNLHQA
190
>>NP_001181982 (OMIM: 126337,613488) DNA damage-inducibl (192 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.1 bits: 156.5 E(85289): 2.2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:24-192)
10 20 30
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
:::::::::::::::::::::::::::::::::::::
NP_001 MELVPATPHYPADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
130 140 150 160 170 180
160
pF1KB8 ALIDRMVNLHQA
::::::::::::
NP_001 ALIDRMVNLHQA
190
>>NP_001181984 (OMIM: 126337,613488) DNA damage-inducibl (192 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 810.1 bits: 156.5 E(85289): 2.2e-38
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:24-192)
10 20 30
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
:::::::::::::::::::::::::::::::::::::
NP_001 MELVPATPHYPADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
130 140 150 160 170 180
160
pF1KB8 ALIDRMVNLHQA
::::::::::::
NP_001 ALIDRMVNLHQA
190
169 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:57:49 2016 done: Sat Nov 5 19:57:50 2016
Total Scan time: 6.910 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]