Result of FASTA (ccds) for
pF1KB8877
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8877, 168 aa
1>>>pF1KB8877 168 - 168 aa - 168 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1885+/-0.00102; mu= 6.7738+/- 0.059
mean_var=97.1679+/-20.884, 0's: 0 Z-trim(105.9): 236 B-trim: 334 in 2/48
Lambda= 0.130111
statistics sampled from 8378 (8669) to 8378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.266), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1 ( 168) 1092 215.3 1.4e-56
CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19 ( 166) 437 92.3 1.5e-19
CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9 ( 167) 314 69.2 1.3e-12
CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9 ( 156) 311 68.7 1.8e-12
CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9 ( 138) 298 66.2 9e-12
>>CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1 (168 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1129.1 bits: 215.3 E(32554): 1.4e-56
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)
10 20 30 40 50 60
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE
70 80 90 100 110 120
130 140 150 160
pF1KB8 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
130 140 150 160
>>CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19 (166 aa)
initn: 494 init1: 330 opt: 437 Z-score: 464.7 bits: 92.3 E(32554): 1.5e-19
Smith-Waterman score: 437; 45.8% identity (77.4% similar) in 155 aa overlap (6-159:9-161)
10 20 30 40 50
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRL
:..:..::::::.... ::. . :. .: : ::.:::::: .:. :: .:
CCDS12 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL
: .::.:...: .: . .:::::.::::::..:.: ::::. :. : ::.:::..:::
CCDS12 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
:: ::. . :.. .:. .: : .:: : ...:...:..
CCDS12 AVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
130 140 150 160
>>CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9 (167 aa)
initn: 312 init1: 181 opt: 314 Z-score: 339.9 bits: 69.2 E(32554): 1.3e-12
Smith-Waterman score: 314; 38.1% identity (69.4% similar) in 147 aa overlap (3-148:10-156)
10 20 30 40 50
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA
:: .. ::.::::: .:.. .::. .. :: :..:: .::: .:. ..:
CCDS56 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 RRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK
. :::.::.:. : . .. .::::: :::::: .: . : ....: : ::. :: .
CCDS56 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
:: :...: .... : . . :.: ... :
CCDS56 LGHRDVARYLRAAAGGTRGSNHARIDAAEGPSEMIGNHLWVCRSRHA
130 140 150 160
>>CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9 (156 aa)
initn: 312 init1: 181 opt: 311 Z-score: 337.2 bits: 68.7 E(32554): 1.8e-12
Smith-Waterman score: 311; 39.6% identity (70.5% similar) in 139 aa overlap (3-140:10-148)
10 20 30 40 50
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA
:: .. ::.::::: .:.. .::. .. :: :..:: .::: .:. ..:
CCDS65 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 RRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK
. :::.::.:. : . .. .::::: :::::: .: . : ....: : ::. :: .
CCDS65 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
:: :...: .... : . . :.:
CCDS65 LGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD
130 140 150
>>CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9 (138 aa)
initn: 310 init1: 176 opt: 298 Z-score: 324.8 bits: 66.2 E(32554): 9e-12
Smith-Waterman score: 298; 45.2% identity (73.9% similar) in 115 aa overlap (9-122:18-132)
10 20 30 40 50
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE
:::::::: .:.. .::. ... :. : ::: :.::: .:. .
CCDS65 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMGSAR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA
.:. :::.::.:. : . .. .::::: :::::: .: . : ....: : ::. ::
CCDS65 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
..:: :. .:
CCDS65 EERGHRDVAGYLRTATGD
130
168 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:57:20 2016 done: Sat Nov 5 19:57:20 2016
Total Scan time: 1.850 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]