FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8875, 166 aa
  1>>>pF1KB8875 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2661+/-0.000904; mu= 6.7154+/- 0.053
 mean_var=97.9281+/-20.129, 0's: 0 Z-trim(108.0): 231  B-trim: 71 in 2/48
 Lambda= 0.129605
 statistics sampled from 9610 (9901) to 9610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.304), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19        ( 166) 1064 209.0 1.1e-54
CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1           ( 168)  437 91.8 2.2e-19
CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9          ( 138)  342 74.0 4.1e-14
CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9          ( 156)  338 73.2 7.6e-14
CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9         ( 167)  332 72.1 1.7e-13


>>CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19             (166 aa)
 initn: 1064 init1: 1064 opt: 1064  Z-score: 1095.3  bits: 209.0 E(32554): 1.1e-54
Smith-Waterman score: 1064; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB8 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT
               70        80        90       100       110       120

              130       140       150       160      
pF1KB8 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
              130       140       150       160      

>>CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1                (168 aa)
 initn: 465 init1: 330 opt: 437  Z-score: 461.6  bits: 91.8 E(32554): 2.2e-19
Smith-Waterman score: 437; 45.8% identity (77.4% similar) in 155 aa overlap (9-161:6-159)

               10        20        30        40        50        60
pF1KB8 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL
               :..:..::::::....  ::. . :. .: : ::.:::::: .:.  :: .:
CCDS55    MAEPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRL
                  10        20         30        40        50      

               70        80        90       100       110       120
pF1KB8 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT
       : .::.:...: .: . .:::::.::::::..:.:  ::::. :. : ::.:::..::: 
CCDS55 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL
         60        70        80        90       100       110      

                130       140       150       160          
pF1KB8 AVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL    
        :: ::. .  :.. .:. .: :  .::   : ...:...:..         
CCDS55 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
        120       130       140       150       160        

>>CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9               (138 aa)
 initn: 373 init1: 209 opt: 342  Z-score: 366.9  bits: 74.0 E(32554): 4.1e-14
Smith-Waterman score: 342; 51.7% identity (75.0% similar) in 116 aa overlap (12-126:18-132)

                     10        20        30        40        50    
pF1KB8       MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST
                        :..::::: :..::.::.   . :...::::. :.::::.::.
CCDS65 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLE-AGADPNGVNRFGRRAIQVMMMGSA
               10        20        30         40        50         

           60        70         80        90       100       110   
pF1KB8 AIALELLKQGASPNVQDTSG-TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL
        .:  :: .:: ::  : .  : ::::::: :::::: :: . :: ..: :. : ::. :
CCDS65 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL
      60        70        80        90       100       110         

           120       130       140       150       160      
pF1KB8 AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
       : ..::  :...:                                        
CCDS65 AEERGHRDVAGYLRTATGD                                  
     120       130                                          

>>CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9               (156 aa)
 initn: 303 init1: 218 opt: 338  Z-score: 362.1  bits: 73.2 E(32554): 7.6e-14
Smith-Waterman score: 338; 44.0% identity (64.7% similar) in 150 aa overlap (8-156:12-156)

                   10        20        30        40        50      
pF1KB8     MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI
                  ..: :. ::::: :.::: ::.   . :.: : .:.  .::::.::. .
CCDS65 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAL-PNAPNSYGRRPIQVMMMGSARV
               10        20        30         40        50         

         60        70         80        90       100       110     
pF1KB8 ALELLKQGASPNVQDTSG-TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV
       :  :: .:: ::  : .  : ::::::: :::::: :: . :: ..: :. : ::. :: 
CCDS65 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE
      60        70        80        90       100       110         

         120       130       140       150       160      
pF1KB8 QEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL
       . ::  :. .: : .      .:: .  ..   .: .:. :          
CCDS65 ELGHRDVARYLRAAAG----GTRGSNHARIDAAEGPSDIPD          
     120       130           140       150                

>>CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9              (167 aa)
 initn: 303 init1: 218 opt: 332  Z-score: 355.6  bits: 72.1 E(32554): 1.7e-13
Smith-Waterman score: 332; 43.0% identity (65.1% similar) in 149 aa overlap (8-155:12-155)

                   10        20        30        40        50      
pF1KB8     MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI
                  ..: :. ::::: :.::: ::.   . :.: : .:.  .::::.::. .
CCDS56 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAL-PNAPNSYGRRPIQVMMMGSARV
               10        20        30         40        50         

         60        70         80        90       100       110     
pF1KB8 ALELLKQGASPNVQDTSG-TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV
       :  :: .:: ::  : .  : ::::::: :::::: :: . :: ..: :. : ::. :: 
CCDS56 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE
      60        70        80        90       100       110         

         120       130       140       150       160       
pF1KB8 QEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL 
       . ::  :. .: : .      .:: .  ..   .: ....            
CCDS56 ELGHRDVARYLRAAAG----GTRGSNHARIDAAEGPSEMIGNHLWVCRSRHA
     120       130           140       150       160       




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:19:39 2016 done: Fri Nov  4 20:19:39 2016
 Total Scan time:  1.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]