FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8870, 134 aa
  1>>>pF1KB8870 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5918+/-0.000727; mu= 9.6083+/- 0.044
 mean_var=64.5202+/-12.776, 0's: 0 Z-trim(109.1): 32  B-trim: 0 in 0/50
 Lambda= 0.159671
 statistics sampled from 10635 (10661) to 10635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS1659.1 ID2 gene_id:3398|Hs108|chr2             ( 134)  868 208.0 1.4e-54
CCDS4544.1 ID4 gene_id:3400|Hs108|chr6             ( 161)  305 78.3 1.8e-15
CCDS13185.1 ID1 gene_id:3397|Hs108|chr20           ( 155)  301 77.4 3.4e-15
CCDS13186.1 ID1 gene_id:3397|Hs108|chr20           ( 149)  286 74.0 3.6e-14
CCDS237.1 ID3 gene_id:3399|Hs108|chr1              ( 119)  275 71.4 1.7e-13


>>CCDS1659.1 ID2 gene_id:3398|Hs108|chr2                  (134 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1093.3  bits: 208.0 E(32554): 1.4e-54
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB8 MKAFSPVRSVRKNSLSDHSLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MKAFSPVRSVRKNSLSDHSLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KMEILQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KMEILQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEF
               70        80        90       100       110       120

              130    
pF1KB8 PSELMSNDSKALCG
       ::::::::::::::
CCDS16 PSELMSNDSKALCG
              130    

>>CCDS4544.1 ID4 gene_id:3400|Hs108|chr6                  (161 aa)
 initn: 347 init1: 259 opt: 305  Z-score: 391.1  bits: 78.3 E(32554): 1.8e-15
Smith-Waterman score: 305; 54.3% identity (76.6% similar) in 94 aa overlap (25-109:53-146)

                     10        20        30         40        50   
pF1KB8       MKAFSPVRSVRKNSLSDHSLGISRSKTPVDDP-MSLLYNMNDCYSKLKELVPSI
                                     ... .:.: . :  .::::::.:..:::.:
CCDS45 LALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTI
             30        40        50        60        70        80  

            60        70        80              90         100     
pF1KB8 PQNKKVSKMEILQHVIDYILDLQIALDSHPTIVSLH------HQRPGQNQAS--RTPLTT
       : ::::::.::::::::::::::.::..::...         :.  :   :.  :::::.
CCDS45 PPNKKVSKVEILQHVIDYILDLQLALETHPALLRQPPPPAPPHHPAGTCPAAPPRTPLTA
             90       100       110       120       130       140  

         110       120       130    
pF1KB8 LNTDISILSLQASEFPSELMSNDSKALCG
       ::::                         
CCDS45 LNTDPAGAVNKQGDSILCR          
            150       160           

>>CCDS13185.1 ID1 gene_id:3397|Hs108|chr20                (155 aa)
 initn: 336 init1: 249 opt: 301  Z-score: 386.4  bits: 77.4 E(32554): 3.4e-15
Smith-Waterman score: 314; 46.2% identity (70.0% similar) in 130 aa overlap (15-133:35-154)

                               10        20                30      
pF1KB8                 MKAFSPVRSVRKNSLSDHSLGISR------SKTP--VDDPMS--
                                     ::..:..:::      .. :  .:. .   
CCDS13 SGSTATAAAGPSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNV
           10        20        30        40        50        60    

           40        50        60        70        80        90    
pF1KB8 LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHPTIVSLHHQRPG
       :::.:: :::.::::::..:::.::::.:::::::::: :::. :.:.  . .     ::
CCDS13 LLYDMNGCYSRLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGT-----PG
           70        80        90       100       110              

           100       110       120       130    
pF1KB8 -QNQASRTPLTTLNTDISILSLQASEFPSELMSNDSKALCG
        ..   :.::.::: .:: :. .:.  :.     :.. :: 
CCDS13 GRGLPVRAPLSTLNGEISALTAEAACVPA-----DDRILCR
     120       130       140            150     

>>CCDS13186.1 ID1 gene_id:3397|Hs108|chr20                (149 aa)
 initn: 307 init1: 249 opt: 286  Z-score: 368.0  bits: 74.0 E(32554): 3.6e-14
Smith-Waterman score: 293; 49.5% identity (73.0% similar) in 111 aa overlap (15-114:35-140)

                               10        20                30      
pF1KB8                 MKAFSPVRSVRKNSLSDHSLGISR------SKTP--VDDPMS--
                                     ::..:..:::      .. :  .:. .   
CCDS13 SGSTATAAAGPSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNV
           10        20        30        40        50        60    

           40        50        60        70        80        90    
pF1KB8 LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHPTIVSLHHQRPG
       :::.:: :::.::::::..:::.::::.:::::::::: :::. :.:.  . .     ::
CCDS13 LLYDMNGCYSRLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGT-----PG
           70        80        90       100       110              

           100       110       120       130    
pF1KB8 -QNQASRTPLTTLNTDISILSLQASEFPSELMSNDSKALCG
        ..   :.::.::: .:: :.                    
CCDS13 GRGLPVRAPLSTLNGEISALTAEVRSRSDH           
     120       130       140                    

>>CCDS237.1 ID3 gene_id:3399|Hs108|chr1                   (119 aa)
 initn: 283 init1: 203 opt: 275  Z-score: 355.8  bits: 71.4 E(32554): 1.7e-13
Smith-Waterman score: 288; 41.0% identity (70.5% similar) in 139 aa overlap (1-133:1-118)

               10          20           30        40        50     
pF1KB8 MKAFSPVRSVRKN--SLSDHSLGISRS--KTPV-DDPMSLLYNMNDCYSKLKELVPSIPQ
       :::.::::.  .    ::..::.:.:.  : :. ..:.::: .:: :::.:.::::..:.
CCDS23 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB8 NKKVSKMEILQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSL
       . ..:..::::.:::::::::..: ..:.        ::  .. . :.            
CCDS23 GTQLSQVEILQRVIDYILDLQVVL-AEPA--------PGPPDGPHLPI------------
               70        80                 90                     

         120        130    
pF1KB8 QASEFPSEL-MSNDSKALCG
       :..:.  :: .:::....: 
CCDS23 QTAELTPELVISNDKRSFCH
     100       110         




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:36:28 2016 done: Sat Nov  5 00:36:28 2016
 Total Scan time:  1.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]