FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8868, 126 aa
  1>>>pF1KB8868 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0697+/-0.000247; mu= 4.9069+/- 0.016
 mean_var=127.0153+/-25.477, 0's: 0 Z-trim(125.2): 2  B-trim: 1751 in 2/57
 Lambda= 0.113801
 statistics sampled from 48458 (48460) to 48458 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.568), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(85289)
XP_011509547 (OMIM: 600296) PREDICTED: C-type natr ( 126)  852 149.1 1.8e-36
NP_077720 (OMIM: 600296) C-type natriuretic peptid ( 126)  852 149.1 1.8e-36


>>XP_011509547 (OMIM: 600296) PREDICTED: C-type natriure  (126 aa)
 initn: 852 init1: 852 opt: 852  Z-score: 775.7  bits: 149.1 E(85289): 1.8e-36
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
               70        80        90       100       110       120

             
pF1KB8 MSGLGC
       ::::::
XP_011 MSGLGC
             

>>NP_077720 (OMIM: 600296) C-type natriuretic peptide pr  (126 aa)
 initn: 852 init1: 852 opt: 852  Z-score: 775.7  bits: 149.1 E(85289): 1.8e-36
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
               70        80        90       100       110       120

             
pF1KB8 MSGLGC
       ::::::
NP_077 MSGLGC
             




126 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:15:12 2016 done: Fri Nov  4 16:15:13 2016
 Total Scan time:  5.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]