FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8868, 126 aa
  1>>>pF1KB8868 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5918+/-0.000587; mu= 8.2194+/- 0.036
 mean_var=133.1518+/-26.024, 0's: 0 Z-trim(117.9): 1  B-trim: 0 in 0/56
 Lambda= 0.111148
 statistics sampled from 18737 (18738) to 18737 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.865), E-opt: 0.2 (0.576), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS2489.1 NPPC gene_id:4880|Hs108|chr2            ( 126)  852 145.8 6.8e-36


>>CCDS2489.1 NPPC gene_id:4880|Hs108|chr2                 (126 aa)
 initn: 852 init1: 852 opt: 852  Z-score: 757.9  bits: 145.8 E(32554): 6.8e-36
Smith-Waterman score: 852; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MHLSQLLACALLLTLLSLRPSEAKPGAPPKVPRTPPAEELAEPQAAGGGQKKGDKAPGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GANLKGDRSRLLRDLRVDTKSRAAWARLLQEHPNARKYKGANKKGLSKGCFGLKLDRIGS
               70        80        90       100       110       120

             
pF1KB8 MSGLGC
       ::::::
CCDS24 MSGLGC
             




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:15:11 2016 done: Fri Nov  4 16:15:12 2016
 Total Scan time:  1.820 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]