FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8867, 122 aa
  1>>>pF1KB8867 122 - 122 aa - 122 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2553+/-0.000535; mu= 11.1898+/- 0.032
 mean_var=65.7226+/-12.905, 0's: 0 Z-trim(114.5): 3  B-trim: 248 in 1/51
 Lambda= 0.158204
 statistics sampled from 15106 (15108) to 15106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.464), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS5876.2 C7orf34 gene_id:135927|Hs108|chr7       ( 147)  832 197.4 2.2e-51


>>CCDS5876.2 C7orf34 gene_id:135927|Hs108|chr7            (147 aa)
 initn: 832 init1: 832 opt: 832  Z-score: 1036.1  bits: 197.4 E(32554): 2.2e-51
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:26-147)

                                        10        20        30     
pF1KB8                          MPPLAPQLCRAVFLVPILLLLQVKPLNGSPGPKDG
                                :::::::::::::::::::::::::::::::::::
CCDS58 MGQEVHGSCWALGAGGGQRQWVGRSMPPLAPQLCRAVFLVPILLLLQVKPLNGSPGPKDG
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KB8 SQTEKTPSADQNQEQFEEHFVASSVGEMWQVVDMAQQEEDQSSKTAAVHKHSFHLSFCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SQTEKTPSADQNQEQFEEHFVASSVGEMWQVVDMAQQEEDQSSKTAAVHKHSFHLSFCFS
               70        80        90       100       110       120

         100       110       120  
pF1KB8 LASVMVFSGGPLRRTFPNIQLCFMLTH
       :::::::::::::::::::::::::::
CCDS58 LASVMVFSGGPLRRTFPNIQLCFMLTH
              130       140       




122 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:19:05 2016 done: Fri Nov  4 20:19:06 2016
 Total Scan time:  1.850 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]