FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8860, 97 aa
  1>>>pF1KB8860 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7970+/-0.000741; mu= 11.8235+/- 0.045
 mean_var=62.8288+/-12.344, 0's: 0 Z-trim(109.3): 43  B-trim: 370 in 1/52
 Lambda= 0.161806
 statistics sampled from 10781 (10825) to 10781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.280

The best scores are:                                      opt bits E(32554)
CCDS1008.1 S100A10 gene_id:6281|Hs108|chr1         (  97)  661 162.0 5.1e-41
CCDS43333.1 S100Z gene_id:170591|Hs108|chr5        (  99)  311 80.3   2e-16
CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1          (  94)  289 75.2 6.9e-15
CCDS3391.1 S100P gene_id:6286|Hs108|chr4           (  95)  257 67.7 1.2e-12
CCDS1009.1 S100A11 gene_id:6282|Hs108|chr1         ( 105)  254 67.1 2.2e-12


>>CCDS1008.1 S100A10 gene_id:6281|Hs108|chr1              (97 aa)
 initn: 661 init1: 661 opt: 661  Z-score: 849.9  bits: 162.0 E(32554): 5.1e-41
Smith-Waterman score: 661; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KB8 MPSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLD
               10        20        30        40        50        60

               70        80        90       
pF1KB8 QCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
       :::::::::::::::::::::::::::::::::::::
CCDS10 QCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
               70        80        90       

>>CCDS43333.1 S100Z gene_id:170591|Hs108|chr5             (99 aa)
 initn: 317 init1: 239 opt: 311  Z-score: 408.2  bits: 80.3 E(32554): 2e-16
Smith-Waterman score: 311; 46.5% identity (76.8% similar) in 99 aa overlap (1-96:1-99)

               10        20           30        40        50       
pF1KB8 MPSQMEHAMETMMFTFHKFAGD--KGY-LTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK
       ::.:.: ::.::.  ::...:   : . :.: .:..:...:.  ::  ::.   ::::..
CCDS43 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
               10        20        30        40        50        60

        60        70        80        90       
pF1KB8 DLDQCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
       :::  .:..: :. :  ..:.::.::::::: ..:.::: 
CCDS43 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK 
               70        80        90          

>>CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1               (94 aa)
 initn: 317 init1: 245 opt: 289  Z-score: 380.8  bits: 75.2 E(32554): 6.9e-15
Smith-Waterman score: 289; 48.9% identity (75.6% similar) in 90 aa overlap (1-87:1-90)

               10        20           30        40        50       
pF1KB8 MPSQMEHAMETMMFTFHKFAG---DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK
       : :..: ::::.. .::  .:   ::  :.:..:. :.. :. :::. :::  ::::.::
CCDS10 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
               10        20        30        40        50        60

        60        70        80        90       
pF1KB8 DLDQCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
       .::.  ::.: :: .  :.:.::.:::..:          
CCDS10 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS      
               70        80        90          

>>CCDS3391.1 S100P gene_id:6286|Hs108|chr4                (95 aa)
 initn: 225 init1: 225 opt: 257  Z-score: 340.3  bits: 67.7 E(32554): 1.2e-12
Smith-Waterman score: 257; 45.5% identity (76.1% similar) in 88 aa overlap (3-87:2-89)

               10        20           30        40        50       
pF1KB8 MPSQMEHAMETMMFTFHKFAGDKGY---LTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK
         ...: ::  .. .: ...:..:    ::: .:.::::::.::::.. ::  ::::..:
CCDS33  MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
                10        20        30        40        50         

        60        70        80        90       
pF1KB8 DLDQCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
       :::   :..: :. :. ..:..: ::. ::          
CCDS33 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK    
      60        70        80        90         

>>CCDS1009.1 S100A11 gene_id:6282|Hs108|chr1              (105 aa)
 initn: 235 init1: 163 opt: 254  Z-score: 335.9  bits: 67.1 E(32554): 2.2e-12
Smith-Waterman score: 254; 40.0% identity (75.6% similar) in 90 aa overlap (2-88:7-96)

                    10        20           30        40        50  
pF1KB8      MPSQMEHAMETMMFTFHKFAGDKGY---LTKEDLRVLMEKEFPGFLENQKDPLAV
             :.. :. .:... .:.:.::  ::   :.: ..  .:. :. .: .::::: ..
CCDS10 MAKISSPTETERCIESLIAVFQKYAGKDGYNYTLSKTEFLSFMNTELAAFTKNQKDPGVL
               10        20        30        40        50        60

             60        70        80        90       
pF1KB8 DKIMKDLDQCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK
       :..:: ::   ::.. :. :..::.::..::.: :.         
CCDS10 DRMMKKLDTNSDGQLDFSEFLNLIGGLAMACHDSFLKAVPSQKRT
               70        80        90       100     




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:10:45 2016 done: Fri Nov  4 16:10:45 2016
 Total Scan time:  1.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]