FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8858, 92 aa
  1>>>pF1KB8858 92 - 92 aa - 92 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9535+/-0.000877; mu= 10.8801+/- 0.053
 mean_var=65.0956+/-13.144, 0's: 0 Z-trim(106.0): 44  B-trim: 290 in 1/51
 Lambda= 0.158964
 statistics sampled from 8675 (8715) to 8675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.290

The best scores are:                                      opt bits E(32554)
CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1         (  92)  584 142.1 4.7e-35
CCDS1036.1 S100A9 gene_id:6280|Hs108|chr1          ( 114)  274 71.1 1.4e-13
CCDS3391.1 S100P gene_id:6286|Hs108|chr4           (  95)  253 66.2 3.4e-12
CCDS13736.1 S100B gene_id:6285|Hs108|chr21         (  92)  246 64.6   1e-11


>>CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1              (92 aa)
 initn: 584 init1: 584 opt: 584  Z-score: 742.9  bits: 142.1 E(32554): 4.7e-35
Smith-Waterman score: 584; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KB8 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG
               10        20        30        40        50        60

               70        80        90  
pF1KB8 LDANQDEQVDFQEFISLVAIALKAAHYHTHKE
       ::::::::::::::::::::::::::::::::
CCDS10 LDANQDEQVDFQEFISLVAIALKAAHYHTHKE
               70        80        90  

>>CCDS1036.1 S100A9 gene_id:6280|Hs108|chr1               (114 aa)
 initn: 252 init1: 164 opt: 274  Z-score: 357.3  bits: 71.1 E(32554): 1.4e-13
Smith-Waterman score: 274; 46.7% identity (79.3% similar) in 92 aa overlap (1-91:5-96)

                   10        20        30        40         50     
pF1KB8     MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKN-IKDKAVID
           :..::...: :.: ::::::. :: :::..::.:.:. :.: : .:.  :.. ::.
CCDS10 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE
               10        20        30        40        50        60

          60        70        80        90                   
pF1KB8 EIFQGLDANQDEQVDFQEFISLVAIALKAAHYHTHKE                 
       .:.. ::.: :.:..:.::: :.:    :.: . :.                  
CCDS10 HIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP
               70        80        90       100       110    

>>CCDS3391.1 S100P gene_id:6286|Hs108|chr4                (95 aa)
 initn: 269 init1: 253 opt: 253  Z-score: 332.4  bits: 66.2 E(32554): 3.4e-12
Smith-Waterman score: 253; 45.1% identity (72.5% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB8 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG
       ::.::  .  :...: .::  .:  .::.::::: :. ::: . ... ::: ..:.... 
CCDS33 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
               10        20        30        40        50        60

               70        80        90     
pF1KB8 LDANQDEQVDFQEFISLVAIALKAAHYHTHKE   
       :::: : ::::.::: .::   .: : . .:    
CCDS33 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
               70        80        90     

>>CCDS13736.1 S100B gene_id:6285|Hs108|chr21              (92 aa)
 initn: 250 init1: 235 opt: 246  Z-score: 323.9  bits: 64.6 E(32554): 1e-11
Smith-Waterman score: 246; 38.0% identity (78.3% similar) in 92 aa overlap (1-91:1-92)

               10        20        30        40        50        60
pF1KB8 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG
       :..::. . .....::::: :.:    :.:.:::.:...::.. ...::.. :.:.... 
CCDS13 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
               10        20        30        40        50        60

               70        80         90  
pF1KB8 LDANQDEQVDFQEFISLVAIALKAAH-YHTHKE
       :: . : . :::::...::..  : : .  :. 
CCDS13 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE 
               70        80        90   




92 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:09:33 2016 done: Fri Nov  4 16:09:34 2016
 Total Scan time:  1.290 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]