Result of FASTA (ccds) for
pF1KB8857
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8857, 92 aa
1>>>pF1KB8857 92 - 92 aa - 92 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2792+/-0.000735; mu= 9.4442+/- 0.045
mean_var=72.0878+/-14.590, 0's: 0 Z-trim(109.7): 48 B-trim: 387 in 2/49
Lambda= 0.151058
statistics sampled from 11054 (11102) to 11054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.341), width: 16
Scan time: 1.410
The best scores are: opt bits E(32554)
CCDS13736.1 S100B gene_id:6285|Hs108|chr21 ( 92) 606 140.2 1.7e-34
CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1 ( 94) 351 84.7 9.1e-18
CCDS3391.1 S100P gene_id:6286|Hs108|chr4 ( 95) 315 76.8 2.1e-15
CCDS1042.1 S100A4 gene_id:6275|Hs108|chr1 ( 101) 289 71.2 1.1e-13
CCDS1044.1 S100A2 gene_id:6273|Hs108|chr1 ( 97) 284 70.1 2.3e-13
CCDS43333.1 S100Z gene_id:170591|Hs108|chr5 ( 99) 277 68.6 6.8e-13
CCDS1041.2 S100A5 gene_id:6276|Hs108|chr1 ( 92) 251 62.9 3.3e-11
CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1 ( 92) 246 61.8 6.9e-11
>>CCDS13736.1 S100B gene_id:6285|Hs108|chr21 (92 aa)
initn: 606 init1: 606 opt: 606 Z-score: 732.9 bits: 140.2 E(32554): 1.7e-34
Smith-Waterman score: 606; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
10 20 30 40 50 60
70 80 90
pF1KB8 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
::::::::::::::::::::::::::::::::
CCDS13 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
70 80 90
>>CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1 (94 aa)
initn: 351 init1: 351 opt: 351 Z-score: 432.4 bits: 84.7 E(32554): 9.1e-18
Smith-Waterman score: 351; 60.2% identity (88.6% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
:::: :: .::.::: .::.::::.::.:.:::::...::: ::. :. ..:::::.
CCDS10 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
10 20 30 40 50 60
60 70 80 90
pF1KB8 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
::..:::: ::::....:: .:.::..::
CCDS10 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
70 80 90
>>CCDS3391.1 S100P gene_id:6286|Hs108|chr4 (95 aa)
initn: 315 init1: 315 opt: 315 Z-score: 390.0 bits: 76.8 E(32554): 2.1e-15
Smith-Waterman score: 315; 51.1% identity (81.1% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
:.::: :: .:::: .::: ::. . : :.::: :...:: ::. :....:::...
CCDS33 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
10 20 30 40 50 60
70 80 90
pF1KB8 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
:: .::.. ::.::..::: .:.:::..::
CCDS33 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
70 80 90
>>CCDS1042.1 S100A4 gene_id:6275|Hs108|chr1 (101 aa)
initn: 289 init1: 289 opt: 289 Z-score: 359.0 bits: 71.2 E(32554): 1.1e-13
Smith-Waterman score: 289; 48.3% identity (80.5% similar) in 87 aa overlap (4-90:5-91)
10 20 30 40 50
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
::::. .....::.:::.:::: ::.:::::::.. :: :: . .. . .:.:
CCDS10 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
10 20 30 40 50 60
60 70 80 90
pF1KB8 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
.::.. :.: ::::. .:.. .. :.::::
CCDS10 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK
70 80 90 100
>>CCDS1044.1 S100A2 gene_id:6273|Hs108|chr1 (97 aa)
initn: 297 init1: 280 opt: 284 Z-score: 353.3 bits: 70.1 E(32554): 2.3e-13
Smith-Waterman score: 284; 44.9% identity (82.0% similar) in 89 aa overlap (2-90:3-91)
10 20 30 40 50
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
: ::.:...:. .::.:: .:::: ::.:.:.:::...:: :. : ..: . :.:
CCDS10 MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
10 20 30 40 50 60
60 70 80 90
pF1KB8 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
.::...: . ::::. .:.:..:. :..::.
CCDS10 SLDENSDQQVDFQEYAVFLALITVMCNDFFQGCPDRP
70 80 90
>>CCDS43333.1 S100Z gene_id:170591|Hs108|chr5 (99 aa)
initn: 300 init1: 273 opt: 277 Z-score: 344.9 bits: 68.6 E(32554): 6.8e-13
Smith-Waterman score: 277; 46.6% identity (80.7% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
..:: :: ..: .::.:::.: . ::.:.::: :.. ::..:: :: ..:::...
CCDS43 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
:: . :.: ::.::...:: .:.::...:
CCDS43 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>CCDS1041.2 S100A5 gene_id:6276|Hs108|chr1 (92 aa)
initn: 243 init1: 148 opt: 251 Z-score: 314.8 bits: 62.9 E(32554): 3.3e-11
Smith-Waterman score: 251; 45.5% identity (80.7% similar) in 88 aa overlap (2-89:3-87)
10 20 30 40 50
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
. ::::..... .::.::::::.: :...::::::..:: : :.::. . : .:.
CCDS10 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELC--LGEMKESSI-DDLMK
10 20 30 40 50
60 70 80 90
pF1KB8 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
.::...: : ::.:. .:..:. : ..::
CCDS10 SLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
60 70 80 90
>>CCDS1037.1 S100A12 gene_id:6283|Hs108|chr1 (92 aa)
initn: 250 init1: 235 opt: 246 Z-score: 308.9 bits: 61.8 E(32554): 6.9e-11
Smith-Waterman score: 246; 38.0% identity (78.3% similar) in 92 aa overlap (1-92:1-91)
10 20 30 40 50 60
pF1KB8 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
:..::. . .....::::: :.: :.:.:::.:...::.. ...::.. :.:....
CCDS10 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG
10 20 30 40 50 60
70 80 90
pF1KB8 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
:: . : . :::::...::.. : : . :.
CCDS10 LDANQDEQVDFQEFISLVAIALKAAH-YHTHKE
70 80 90
92 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:08:14 2016 done: Fri Nov 4 16:08:15 2016
Total Scan time: 1.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]