FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8856, 90 aa
  1>>>pF1KB8856 90 - 90 aa - 90 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7748+/-0.000699; mu= 6.1570+/- 0.042
 mean_var=66.3032+/-12.919, 0's: 0 Z-trim(109.6): 43  B-trim: 0 in 0/51
 Lambda= 0.157510
 statistics sampled from 10990 (11033) to 10990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.339), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS1040.1 S100A6 gene_id:6277|Hs108|chr1          (  90)  571 137.8 8.5e-34
CCDS1042.1 S100A4 gene_id:6275|Hs108|chr1          ( 101)  318 80.4 1.9e-16
CCDS1041.2 S100A5 gene_id:6276|Hs108|chr1          (  92)  304 77.2 1.6e-15
CCDS1044.1 S100A2 gene_id:6273|Hs108|chr1          (  97)  273 70.1 2.2e-13
CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1          (  94)  245 63.8 1.8e-11
CCDS1043.1 S100A3 gene_id:6274|Hs108|chr1          ( 101)  236 61.7 7.8e-11


>>CCDS1040.1 S100A6 gene_id:6277|Hs108|chr1               (90 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 720.2  bits: 137.8 E(32554): 8.5e-34
Smith-Waterman score: 571; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
               10        20        30        40        50        60

               70        80        90
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG
       ::::::::::::::::::::::::::::::
CCDS10 DRNKDQEVNFQEYVTFLGALALIYNEALKG
               70        80        90

>>CCDS1042.1 S100A4 gene_id:6275|Hs108|chr1               (101 aa)
 initn: 299 init1: 188 opt: 318  Z-score: 408.7  bits: 80.4 E(32554): 1.9e-16
Smith-Waterman score: 318; 50.0% identity (81.5% similar) in 92 aa overlap (1-90:1-92)

               10        20        30        40          50        
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLME
       :::::..:. ..:. ::::::.::::  :.:.:::::. .::   .:.. ..: . .:: 
CCDS10 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
               10        20        30        40        50        60

       60        70        80        90         
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG         
       .:: :.:.::.:::: .::. .:.. :: ..:         
CCDS10 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK
               70        80        90       100 

>>CCDS1041.2 S100A5 gene_id:6276|Hs108|chr1               (92 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 392.1  bits: 77.2 E(32554): 1.6e-15
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:1-85)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       :  ::..:.  .:. :::::::::.: :::.:::::::.::: .: ..... :  ::..:
CCDS10 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EMKESSIDDLMKSL
               10        20        30        40         50         

               70        80        90   
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG   
       :.:.:::..:.:: .::  : . ::.       
CCDS10 DKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
      60        70        80        90  

>>CCDS1044.1 S100A2 gene_id:6273|Hs108|chr1               (97 aa)
 initn: 254 init1: 156 opt: 273  Z-score: 353.7  bits: 70.1 E(32554): 2.2e-13
Smith-Waterman score: 273; 46.7% identity (79.3% similar) in 92 aa overlap (1-90:1-92)

               10        20        30        40          50        
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLME
       :   :.::...::. ::::: .::::  ::: :.:::..:::   .: :...  . .:: 
CCDS10 MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
               10        20        30        40        50        60

       60        70        80        90     
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG     
       .::.:.::.:.::::..::. .... :. ..:     
CCDS10 SLDENSDQQVDFQEYAVFLALITVMCNDFFQGCPDRP
               70        80        90       

>>CCDS1047.1 S100A1 gene_id:6271|Hs108|chr1               (94 aa)
 initn: 245 init1: 161 opt: 245  Z-score: 319.5  bits: 63.8 E(32554): 1.8e-11
Smith-Waterman score: 245; 46.0% identity (78.2% similar) in 87 aa overlap (1-85:1-87)

               10        20        30        40         50         
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT-IGSKLQDAE-IARLME
       :.  :. :.  :. .:: .::.::::. :::::::::.: ::. . .  .:.. . ..:.
CCDS10 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
               10        20        30        40        50        60

       60        70        80        90  
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG  
       .::.: : ::.:::::....::..  :       
CCDS10 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
               70        80        90    

>>CCDS1043.1 S100A3 gene_id:6274|Hs108|chr1               (101 aa)
 initn: 227 init1: 157 opt: 236  Z-score: 308.0  bits: 61.7 E(32554): 7.8e-11
Smith-Waterman score: 236; 45.1% identity (70.3% similar) in 91 aa overlap (1-89:1-91)

               10        20        30        40          50        
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTI--GSKLQDAEIARLME
       :: ::.::.. .:  :..:.:: :::. : . :::::.::::.    ..... .  ..: 
CCDS10 MARPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMS
               10        20        30        40        50        60

       60        70        80        90         
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG         
        :: ::: ::.: :::  :. : :  .: .:          
CCDS10 VLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDCPSEPPCSQ
               70        80        90       100 




90 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:34:34 2016 done: Sat Nov  5 00:34:34 2016
 Total Scan time:  1.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]