FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8851, 73 aa
  1>>>pF1KB8851 73 - 73 aa - 73 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8561+/-0.000523; mu= 6.3093+/- 0.032
 mean_var=84.6774+/-16.620, 0's: 0 Z-trim(115.8): 12  B-trim: 0 in 0/53
 Lambda= 0.139377
 statistics sampled from 16321 (16333) to 16321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.502), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7           (  73)  481 104.6 5.6e-24
CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7           (  74)  380 84.3 7.4e-18
CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17         (  69)  299 68.0 5.6e-13


>>CCDS5634.1 GNG11 gene_id:2791|Hs108|chr7                (73 aa)
 initn: 481 init1: 481 opt: 481  Z-score: 543.9  bits: 104.6 E(32554): 5.6e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
               10        20        30        40        50        60

               70   
pF1KB8 KNPFKEKGSCVIS
       :::::::::::::
CCDS56 KNPFKEKGSCVIS
               70   

>>CCDS5633.1 GNGT1 gene_id:2792|Hs108|chr7                (74 aa)
 initn: 378 init1: 350 opt: 380  Z-score: 434.1  bits: 84.3 E(32554): 7.4e-18
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-73:1-74)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
       ::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
CCDS56 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
               10        20        30        40        50        60

                70   
pF1KB8 KNPFKE-KGSCVIS
       :::::: ::.::::
CCDS56 KNPFKELKGGCVIS
               70    

>>CCDS11545.1 GNGT2 gene_id:2793|Hs108|chr17              (69 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 346.5  bits: 68.0 E(32554): 5.6e-13
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
CCDS11     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70   
pF1KB8 KNPFKEKGSCVIS
       ::::::::.:.::
CCDS11 KNPFKEKGGCLIS
         60         




73 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:12:14 2016 done: Sat Nov  5 20:12:15 2016
 Total Scan time:  1.390 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]