FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8850, 71 aa
  1>>>pF1KB8850 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8570+/-0.000511; mu= 8.8954+/- 0.031
 mean_var=45.5656+/- 8.978, 0's: 0 Z-trim(112.3): 20  B-trim: 0 in 0/51
 Lambda= 0.190001
 statistics sampled from 13044 (13064) to 13044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.401), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  454 130.8   7e-32
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  381 110.8 7.8e-26
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  363 105.8 2.4e-24
CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19         (  70)  351 102.5 2.2e-23
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  306 90.2 1.1e-19
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  291 86.1   2e-18
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  228 68.8   3e-13
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  226 68.3 4.4e-13


>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 454 init1: 454 opt: 454  Z-score: 685.8  bits: 130.8 E(32554): 7e-32
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
               10        20        30        40        50        60

               70 
pF1KB8 FREKKFFCAIL
       :::::::::::
CCDS32 FREKKFFCAIL
               70 

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 577.3  bits: 110.8 E(32554): 7.8e-26
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (1-71:5-75)

                   10        20        30        40        50      
pF1KB8     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

         60        70 
pF1KB8 SENPFREKKFFCAIL
       ::::::::::::.::
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 358 init1: 351 opt: 363  Z-score: 550.6  bits: 105.8 E(32554): 2.4e-24
Smith-Waterman score: 363; 79.4% identity (95.6% similar) in 68 aa overlap (4-71:8-75)

                   10        20        30        40        50      
pF1KB8     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
              :.: ::.::::.:::::.::.. ::::::::::::.::.::: ::::.::::.
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

         60        70 
pF1KB8 SENPFREKKFFCAIL
       :::::::::::::.:
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19              (70 aa)
 initn: 358 init1: 351 opt: 351  Z-score: 533.4  bits: 102.5 E(32554): 2.2e-23
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (3-71:2-70)

               10        20        30        40        50        60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
         ::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
CCDS12  MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
                10        20        30        40        50         

               70 
pF1KB8 FREKKFFCAIL
       ::.:..::..:
CCDS12 FRDKRLFCVLL
      60        70

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 308 init1: 300 opt: 306  Z-score: 466.9  bits: 90.2 E(32554): 1.1e-19
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (6-71:4-68)

               10        20        30        40        50        60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
            : .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
CCDS12   MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
                 10        20        30        40        50        

               70 
pF1KB8 FREKKFFCAIL
       :..::  : ::
CCDS12 FKDKKP-CIIL
       60         

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 291 init1: 283 opt: 291  Z-score: 444.3  bits: 86.1 E(32554): 2e-18
Smith-Waterman score: 291; 62.3% identity (85.5% similar) in 69 aa overlap (3-71:5-72)

                 10        20        30        40        50        
pF1KB8   MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE
           . .: .:::::. :.::..::.:.:::::::.::::.::: ::. ::::  .:.::
CCDS30 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
               10        20        30        40        50        60

       60        70 
pF1KB8 NPFREKKFFCAIL
       :::..::  : ::
CCDS30 NPFKDKKT-CIIL
                70  

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 230 init1: 212 opt: 228  Z-score: 351.3  bits: 68.8 E(32554): 3e-13
Smith-Waterman score: 228; 54.9% identity (78.9% similar) in 71 aa overlap (1-71:1-68)

               10        20        30        40        50        60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
       :.:. .::  :  .::::::.::...:::::.:::.:. ::  .: .: ::. :::. ::
CCDS35 MSSGASASALQ--RLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNP
               10          20        30        40        50        

               70 
pF1KB8 FREKKFFCAIL
       ::: .  ::.:
CCDS35 FREPRS-CALL
       60         

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 197 init1: 187 opt: 226  Z-score: 348.4  bits: 68.3 E(32554): 4.4e-13
Smith-Waterman score: 226; 48.5% identity (82.4% similar) in 68 aa overlap (4-71:2-68)

               10        20        30        40        50        60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
          ....:.:  .:.:.::..::...:.:::.:::::  .:  .:..::::: : .: ::
CCDS69   MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNP
                 10        20        30        40        50        

               70 
pF1KB8 FREKKFFCAIL
       :: .:  :..:
CCDS69 FRPQKV-CSFL
       60         




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:55:46 2016 done: Sat Nov  5 19:55:46 2016
 Total Scan time:  1.310 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]