FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8849, 71 aa
  1>>>pF1KB8849 71 - 71 aa - 71 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5990+/-0.000303; mu= 10.1354+/- 0.019
 mean_var=46.2060+/- 9.243, 0's: 0 Z-trim(115.2): 2  B-trim: 0 in 0/52
 Lambda= 0.188680
 statistics sampled from 25545 (25547) to 25545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.3), width:  16
 Scan time:  3.500

The best scores are:                                      opt bits E(85289)
NP_997001 (OMIM: 608780,616395) general transcript (  71)  451 129.5 4.3e-31
XP_016866351 (OMIM: 608780,616395) PREDICTED: gene (  81)  374 108.6 9.9e-25


>>NP_997001 (OMIM: 608780,616395) general transcription   (71 aa)
 initn: 451 init1: 451 opt: 451  Z-score: 679.1  bits: 129.5 E(85289): 4.3e-31
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KB8 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL
               10        20        30        40        50        60

               70 
pF1KB8 MDQNAFSLTQK
       :::::::::::
NP_997 MDQNAFSLTQK
               70 

>>XP_016866351 (OMIM: 608780,616395) PREDICTED: general   (81 aa)
 initn: 374 init1: 374 opt: 374  Z-score: 565.0  bits: 108.6 E(85289): 9.9e-25
Smith-Waterman score: 374; 100.0% identity (100.0% similar) in 59 aa overlap (13-71:23-81)

                         10        20        30        40        50
pF1KB8           MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELV
                             ::::::::::::::::::::::::::::::::::::::
XP_016 MAYRRRRTLPATPRRFCICGPSDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELV
               10        20        30        40        50        60

               60        70 
pF1KB8 NVLQERVGELMDQNAFSLTQK
       :::::::::::::::::::::
XP_016 NVLQERVGELMDQNAFSLTQK
               70        80 




71 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:06:20 2016 done: Fri Nov  4 16:06:20 2016
 Total Scan time:  3.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]