FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8849, 71 aa
  1>>>pF1KB8849 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8153+/-0.00065; mu= 8.6563+/- 0.039
 mean_var=44.5021+/- 9.081, 0's: 0 Z-trim(108.0): 6  B-trim: 177 in 1/49
 Lambda= 0.192258
 statistics sampled from 9932 (9935) to 9932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.305), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(32554)
CCDS5256.1 GTF2H5 gene_id:404672|Hs108|chr6        (  71)  451 131.8 3.4e-32


>>CCDS5256.1 GTF2H5 gene_id:404672|Hs108|chr6             (71 aa)
 initn: 451 init1: 451 opt: 451  Z-score: 691.6  bits: 131.8 E(32554): 3.4e-32
Smith-Waterman score: 451; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KB8 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL
               10        20        30        40        50        60

               70 
pF1KB8 MDQNAFSLTQK
       :::::::::::
CCDS52 MDQNAFSLTQK
               70 




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:06:19 2016 done: Fri Nov  4 16:06:19 2016
 Total Scan time:  1.140 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]