FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8847, 67 aa
  1>>>pF1KB8847 67 - 67 aa - 67 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0462+/-0.000232; mu= 8.3728+/- 0.015
 mean_var=61.3476+/-12.579, 0's: 0 Z-trim(122.9): 49  B-trim: 69 in 1/54
 Lambda= 0.163748
 statistics sampled from 41867 (41917) to 41867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.491), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(85289)
NP_057625 (OMIM: 607298) guanine nucleotide-bindin (  67)  469 117.8 1.3e-27
NP_004117 (OMIM: 604390) guanine nucleotide-bindin (  73)  133 38.4  0.0011


>>NP_057625 (OMIM: 607298) guanine nucleotide-binding pr  (67 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 616.5  bits: 117.8 E(85289): 1.3e-27
Smith-Waterman score: 469; 100.0% identity (100.0% similar) in 67 aa overlap (1-67:1-67)

               10        20        30        40        50        60
pF1KB8 MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEEWDVPQMKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMKNNPWVE
               10        20        30        40        50        60

              
pF1KB8 KGKCTIL
       :::::::
NP_057 KGKCTIL
              

>>NP_004117 (OMIM: 604390) guanine nucleotide-binding pr  (73 aa)
 initn: 162 init1: 121 opt: 133  Z-score: 187.0  bits: 38.4 E(85289): 0.0011
Smith-Waterman score: 133; 35.4% identity (70.8% similar) in 65 aa overlap (5-66:8-72)

                     10        20        30        40        50    
pF1KB8    MEEWDVPQ---MKKEVESLKYQLAFQREMASKTIPELLKWIEDGIPKDPFLNPDLMK
              :.:.   .: :::.:. .. .::...::   :. ..::.   .::...     
NP_004 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
               10        20        30        40        50        60

           60       
pF1KB8 NNPWVEKGKCTIL
       .::. :::.:.: 
NP_004 KNPFKEKGSCVIS
               70   




67 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:29:36 2016 done: Sat Nov  5 00:29:36 2016
 Total Scan time:  3.910 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]