FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8840, 467 aa
  1>>>pF1KB8840 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0395+/-0.000993; mu= 8.6226+/- 0.060
 mean_var=211.6913+/-41.798, 0's: 0 Z-trim(112.9): 17  B-trim: 169 in 1/50
 Lambda= 0.088150
 statistics sampled from 13608 (13620) to 13608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.418), width:  16
 Scan time:  3.770

The best scores are:                                      opt bits E(32554)
CCDS2790.1 CCDC71 gene_id:64925|Hs108|chr3         ( 467) 2973 390.5 1.9e-108


>>CCDS2790.1 CCDC71 gene_id:64925|Hs108|chr3              (467 aa)
 initn: 2973 init1: 2973 opt: 2973  Z-score: 2060.3  bits: 390.5 E(32554): 1.9e-108
Smith-Waterman score: 2973; 99.6% identity (99.6% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KB8 MSVVVQHVEEKAVHSWSRISTAGKKALEEALLVFNPMSQDLSATEAQLVAFLQGLRDDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MSVVVQHVEEKAVHSWSRISTAGKKALEEALLVFNPMSQDLSATEAQLVAFLQGLRDDGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QPTILRSGDVYGYSSCTANPPSQTKLQARAPNPTATSPPASAPRTAMRLPAGRATLLPMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QPTILRSGDVYGYSSCTANPPSQTKLQARAPNPTATSPPASAPRTAMRLPAGRATLLPMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LSGRLAKASTPALAKHATTNLLLSSLKQSSASHARGAAVGFPTHLYPGVYPAMRLSVVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LSGRLAKASTPALAKHATTNLLLSSLKQSSASHARGAAVGFPTHLYPGVYPAMRLSVVLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ALVPLKTPMPCLGAKHKAQSLQLSLADSPLKLRKSSGKGPGNPRPKAPRKTTSKGPKCLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ALVPLKTPMPCLGAKHKAQSLQLSLADSPLKLRKSSGKGPGNPRPKAPRKTTSKGPKCLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RKGPGAGPRRGSGHQSKTNRATGSPSVRRMKGGSALGTKTAQAKVARTLAKAARAQAKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RKGPGAGPRRGSGHQSKTNRATGSPSVRRMKGGSALGTKTAQAKVARTLAKAARAQAKVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RTQAKAAKARAKAKAALVKAKAKAKAAQVKAKAKVMAARAKAKAKAKAVRAKAKVARTQP
       :::::::::::::::: ::::::::::::::::::::: :::::::::::::::::::::
CCDS27 RTQAKAAKARAKAKAAQVKAKAKAKAAQVKAKAKVMAAWAKAKAKAKAVRAKAKVARTQP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 RGRGRPKGSAKARTTRKGQKNRPETVGQKRKRAEEAKDLPPKKRTRLGPRSPKAWLGPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RGRGRPKGSAKARTTRKGQKNRPETVGQKRKRAEEAKDLPPKKRTRLGPRSPKAWLGPGT
              370       380       390       400       410       420

              430       440       450       460       
pF1KB8 AKLLKFRAIKVDRRSSDDEVRQRAQRILRVNLSPVIRLQPLLPYSAV
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AKLLKFRAIKVDRRSSDDEVRQRAQRILRVNLSPVIRLQPLLPYSAV
              430       440       450       460       




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:01:39 2016 done: Fri Nov  4 16:01:40 2016
 Total Scan time:  3.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]