FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8830, 440 aa
  1>>>pF1KB8830 440 - 440 aa - 440 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3871+/-0.000969; mu= 11.7788+/- 0.058
 mean_var=85.6176+/-17.020, 0's: 0 Z-trim(106.1): 46  B-trim: 0 in 0/49
 Lambda= 0.138609
 statistics sampled from 8778 (8809) to 8778 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.271), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14        ( 440) 3048 619.7 1.8e-177
CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2           ( 536) 1160 242.2 9.8e-64


>>CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14             (440 aa)
 initn: 3048 init1: 3048 opt: 3048  Z-score: 3299.5  bits: 619.7 E(32554): 1.8e-177
Smith-Waterman score: 3048; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)

               10        20        30        40        50        60
pF1KB8 MAENNENISKNVDVRPKTSRSRSADRKDGYVWSGKKLSWSKKSESYSDAETVNGIEKTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MAENNENISKNVDVRPKTSRSRSADRKDGYVWSGKKLSWSKKSESYSDAETVNGIEKTEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SLRNQERKHSCSSIELDLDHSCGHRFLGRSLKQKLQDAVGQCFPIKNCSSRHSSGLPSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLRNQERKHSCSSIELDLDHSCGHRFLGRSLKQKLQDAVGQCFPIKNCSSRHSSGLPSKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KIHISELMLDKCPFPPRSDLAFRWHFIKRHTAPINSKSDEWVSTDLSQTELRDGQLKRRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KIHISELMLDKCPFPPRSDLAFRWHFIKRHTAPINSKSDEWVSTDLSQTELRDGQLKRRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 MEENINCFSHTNVQPCVITTDNALCREGPMTGSVMNLVSNNSIEDSDMDSDDEILTLCTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEENINCFSHTNVQPCVITTDNALCREGPMTGSVMNLVSNNSIEDSDMDSDDEILTLCTS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SRKRNKPKWDLDDEILQLETPPKYHTQIDYVHCLVPDLLQINNNPCYWGVMDKYAAEALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SRKRNKPKWDLDDEILQLETPPKYHTQIDYVHCLVPDLLQINNNPCYWGVMDKYAAEALL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 LEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLK
              370       380       390       400       410       420

              430       440
pF1KB8 EYHYKSKVRVLRIDAPEQQC
       ::::::::::::::::::::
CCDS97 EYHYKSKVRVLRIDAPEQQC
              430       440

>>CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2                (536 aa)
 initn: 1399 init1: 1035 opt: 1160  Z-score: 1257.7  bits: 242.2 E(32554): 9.8e-64
Smith-Waterman score: 1496; 54.2% identity (77.3% similar) in 437 aa overlap (7-430:93-525)

                                       10          20        30    
pF1KB8                         MAENNENISKNVD--VRPKTSRSRSADRKDGYVWSG
                                     .: :. :  : : :  .:  . .    :.:
CCDS18 IALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPWGG
             70        80        90       100       110       120  

            40        50        60        70        80         90  
pF1KB8 KKL-SWSKKSESYSDAETVNGIEKTEVSLRNQERKHSCSSIELDLDHSCGHRFLG-RSLK
       ::  : : :..:  ::.   :  .:. .:. .::... ::.. :.: : . : .: :::.
CCDS18 KKKHSCSTKTQSSLDADKKFG--RTRSGLQRRERRYGVSSVH-DMD-SVSSRTVGSRSLR
            130       140         150       160         170        

            100       110       120       130       140       150  
pF1KB8 QKLQDAVGQCFPIKNCSSRHSSGLPSKRKIHISELMLDKCPFPPRSDLAFRWHFIKRHTA
       :.:::.:: :::... :.. .  . .:::::.:::::.:::::  :::: .::.::.:::
CCDS18 QRLQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTA
      180       190       200       210       220       230        

            160         170          180       190       200       
pF1KB8 PINSKSDEWVSTD--LSQTELRDGQLKRR---NMEENINCFSHTNVQPCVITTD-NALCR
       :.. .:  . . :  : .:: .. .:..:   ..::...   .....    :.. : : .
CCDS18 PVSPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYK
      240       250       260       270       280       290        

        210       220         230       240       250        260   
pF1KB8 EGPMTGSVMNLVSNNS--IEDSDMDSDDEILTLCTSSRKRNKPKWDLDDEI-LQLETPPK
        ::  .  :. .:..:  : ... ::...  ::: .::.... . . :..  .. .   :
CCDS18 LGPKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWK
      300       310       320       330       340       350        

           270       280       290       300       310       320   
pF1KB8 YHTQIDYVHCLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVS
        ::::::.::::::::::..:::::::::.: ::::::::::::::::::::::::::::
CCDS18 VHTQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVS
      360       370       380       390       400       410        

           330       340       350       360       370       380   
pF1KB8 FRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIR
       ::::.::::::::::::::::::::::::::  .:::::::::::.::::::::.  : :
CCDS18 FRRYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNR
      420       430       440       450       460       470        

           390       400       410       420       430       440 
pF1KB8 TFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKSKVRVLRIDAPEQQC 
       :::::::.:::.::: ::::::::.::.:: .. .:::::::.::::           
CCDS18 TFPFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK
      480       490       500       510       520       530      




440 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:55:09 2016 done: Fri Nov  4 15:55:09 2016
 Total Scan time:  2.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]