FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8803, 349 aa
  1>>>pF1KB8803 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7626+/-0.000591; mu= 15.5514+/- 0.036
 mean_var=88.3013+/-17.779, 0's: 0 Z-trim(114.3): 44  B-trim: 646 in 1/52
 Lambda= 0.136487
 statistics sampled from 14850 (14897) to 14850 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.458), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS4738.1 FKBPL gene_id:63943|Hs108|chr6          ( 349) 2368 475.4  3e-134


>>CCDS4738.1 FKBPL gene_id:63943|Hs108|chr6               (349 aa)
 initn: 2368 init1: 2368 opt: 2368  Z-score: 2523.6  bits: 475.4 E(32554): 3e-134
Smith-Waterman score: 2368; 99.7% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB8 METPPVNTIGEKDTSQPQQEWEKNLRENLDSVIQIRQQPRDPPTETLELEVSPDPASQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 METPPVNTIGEKDTSQPQQEWEKNLRENLDSVIQIRQQPRDPPTETLELEVSPDPASQIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EHTQGAEKLVAELEGDSHKSHGSTSQMPETLQASDLWYCPDGSFVKKIVIRGHGLDKPKL
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS47 EHTQGAEKLVAELEGDSHKSHGSTSQMPEALQASDLWYCPDGSFVKKIVIRGHGLDKPKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GSCCRVLALGFPFGSGPPEGWTELTMGVGPWREETWGELIEKCLESMCQGEEAELQLPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GSCCRVLALGFPFGSGPPEGWTELTMGVGPWREETWGELIEKCLESMCQGEEAELQLPGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SGPPVRLTLASFTQGRDSWELETSEKEALAREERARGTELFRAGNPEGAARCYGRALRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SGPPVRLTLASFTQGRDSWELETSEKEALAREERARGTELFRAGNPEGAARCYGRALRLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LTLPPPGPPERTVLHANLAACQLLLGQPQLAAQSCDRVLEREPGHLKALYRRGVAQAALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTLPPPGPPERTVLHANLAACQLLLGQPQLAAQSCDRVLEREPGHLKALYRRGVAQAALG
              250       260       270       280       290       300

              310       320       330       340         
pF1KB8 NLEKATADLKKVLAIDPKNRAAQEELGKVVIQGKNQDAGLAQGLRKMFG
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NLEKATADLKKVLAIDPKNRAAQEELGKVVIQGKNQDAGLAQGLRKMFG
              310       320       330       340         




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:43:44 2016 done: Fri Nov  4 15:43:44 2016
 Total Scan time:  3.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]