Result of FASTA (omim) for
pF1KB8800
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8800, 342 aa
1>>>pF1KB8800 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6082+/-0.000558; mu= 20.4850+/- 0.035
mean_var=115.6278+/-28.701, 0's: 0 Z-trim(107.5): 617 B-trim: 809 in 1/49
Lambda= 0.119273
statistics sampled from 14851 (15592) to 14851 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.509), E-opt: 0.2 (0.183), width: 16
Scan time: 6.520
The best scores are: opt bits E(85289)
XP_005264866 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 2275 403.4 3.6e-112
NP_006555 (OMIM: 605163) C-X-C chemokine receptor ( 342) 2275 403.4 3.6e-112
XP_011531593 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 2275 403.4 3.6e-112
XP_011531592 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 2275 403.4 3.6e-112
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 722 136.2 1e-31
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 722 136.2 1e-31
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 682 129.4 1.2e-29
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 681 129.2 1.4e-29
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 681 129.2 1.4e-29
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 674 128.0 3.1e-29
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 674 128.0 3.1e-29
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 664 126.3 1e-28
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 664 126.3 1e-28
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 664 126.3 1e-28
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 664 126.3 1e-28
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 663 126.1 1.2e-28
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 663 126.1 1.2e-28
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 645 123.0 1e-27
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 645 123.0 1e-27
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 645 123.0 1e-27
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 645 123.0 1e-27
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 639 122.0 2.1e-27
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 639 122.0 2.1e-27
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 639 122.0 2.2e-27
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 639 122.0 2.2e-27
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 636 121.5 3e-27
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 636 121.5 3e-27
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 614 117.6 3.7e-26
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 605 116.1 1.2e-25
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 589 113.3 7.9e-25
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 589 113.3 7.9e-25
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 589 113.3 7.9e-25
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 589 113.4 8.2e-25
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 567 109.6 1.1e-23
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 564 109.0 1.5e-23
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 564 109.0 1.5e-23
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 556 107.7 4.1e-23
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 556 107.7 4.1e-23
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 556 107.7 4.1e-23
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 556 107.7 4.1e-23
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 556 107.7 4.1e-23
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 556 107.7 4.1e-23
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 553 107.2 5.8e-23
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 553 107.2 5.8e-23
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 553 107.2 5.8e-23
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 553 107.2 5.8e-23
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 553 107.2 5.9e-23
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 553 107.2 5.9e-23
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 553 107.2 6.2e-23
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 553 107.2 6.2e-23
>>XP_005264866 (OMIM: 605163) PREDICTED: C-X-C chemokine (342 aa)
initn: 2275 init1: 2275 opt: 2275 Z-score: 2134.9 bits: 403.4 E(85289): 3.6e-112
Smith-Waterman score: 2275; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
250 260 270 280 290 300
310 320 330 340
pF1KB8 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
::::::::::::::::::::::::::::::::::::::::::
XP_005 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
310 320 330 340
>>NP_006555 (OMIM: 605163) C-X-C chemokine receptor type (342 aa)
initn: 2275 init1: 2275 opt: 2275 Z-score: 2134.9 bits: 403.4 E(85289): 3.6e-112
Smith-Waterman score: 2275; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
250 260 270 280 290 300
310 320 330 340
pF1KB8 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
::::::::::::::::::::::::::::::::::::::::::
NP_006 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
310 320 330 340
>>XP_011531593 (OMIM: 605163) PREDICTED: C-X-C chemokine (342 aa)
initn: 2275 init1: 2275 opt: 2275 Z-score: 2134.9 bits: 403.4 E(85289): 3.6e-112
Smith-Waterman score: 2275; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
250 260 270 280 290 300
310 320 330 340
pF1KB8 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
::::::::::::::::::::::::::::::::::::::::::
XP_011 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
310 320 330 340
>>XP_011531592 (OMIM: 605163) PREDICTED: C-X-C chemokine (342 aa)
initn: 2275 init1: 2275 opt: 2275 Z-score: 2134.9 bits: 403.4 E(85289): 3.6e-112
Smith-Waterman score: 2275; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
250 260 270 280 290 300
310 320 330 340
pF1KB8 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
::::::::::::::::::::::::::::::::::::::::::
XP_011 KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
310 320 330 340
>>NP_057641 (OMIM: 606065) atypical chemokine receptor 4 (350 aa)
initn: 655 init1: 379 opt: 722 Z-score: 690.5 bits: 136.2 E(85289): 1e-31
Smith-Waterman score: 722; 33.3% identity (67.8% similar) in 354 aa overlap (6-342:12-350)
10 20 30 40 50
pF1KB8 MAEHDYHEDYGFSSFNDSSQEE----HQDFLQFSKVFLPCMYLVVFVCGLVGNS
:.:. ... : :: : ..: .:.::::: . .::: ::.:::
NP_057 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LVLVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYT
.:..: .:.: .. :::...:: .:::... :::::: ..: ::.:..::: ..::
NP_057 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 INFYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYG
.:: ..: .:.::..::...:.:. . .. . . : . . .:. ..:.:.::...
NP_057 LNFVSGMQFLACISIDRYVAVTKVPS--QSGVGKPCW--IICFCVWMAAILLSIPQLVFY
130 140 150 160 170
180 190 200 210 220
pF1KB8 NVFNLDKLIC-----GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQ
.: : :. : : ...... .. .:: .:.: : ::: . .::.. ...
NP_057 TV-N-DNARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 KHRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYT------IMVTEAIAYL
: ::... :. ::..::.:.:..:: :. : .:: ... :.:::.:: .
NP_057 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALF
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 RACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTF--SASHNVEAT
..::::.::.:.. .:.. :..: : .:. .... . : .. .: :
NP_057 HSCLNPILYVFMGASFKNYVMKVAKKYG---------SWRRQRQSVEEFPFDSEGPTEPT
300 310 320 330 340
340
pF1KB8 SMFQL
: :..
NP_057 STFSI
350
>>NP_848540 (OMIM: 606065) atypical chemokine receptor 4 (350 aa)
initn: 655 init1: 379 opt: 722 Z-score: 690.5 bits: 136.2 E(85289): 1e-31
Smith-Waterman score: 722; 33.3% identity (67.8% similar) in 354 aa overlap (6-342:12-350)
10 20 30 40 50
pF1KB8 MAEHDYHEDYGFSSFNDSSQEE----HQDFLQFSKVFLPCMYLVVFVCGLVGNS
:.:. ... : :: : ..: .:.::::: . .::: ::.:::
NP_848 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LVLVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYT
.:..: .:.: .. :::...:: .:::... :::::: ..: ::.:..::: ..::
NP_848 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 INFYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYG
.:: ..: .:.::..::...:.:. . .. . . : . . .:. ..:.:.::...
NP_848 LNFVSGMQFLACISIDRYVAVTKVPS--QSGVGKPCW--IICFCVWMAAILLSIPQLVFY
130 140 150 160 170
180 190 200 210 220
pF1KB8 NVFNLDKLIC-----GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQ
.: : :. : : ...... .. .:: .:.: : ::: . .::.. ...
NP_848 TV-N-DNARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 KHRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYT------IMVTEAIAYL
: ::... :. ::..::.:.:..:: :. : .:: ... :.:::.:: .
NP_848 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALF
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 RACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTF--SASHNVEAT
..::::.::.:.. .:.. :..: : .:. .... . : .. .: :
NP_848 HSCLNPILYVFMGASFKNYVMKVAKKYG---------SWRRQRQSVEEFPFDSEGPTEPT
300 310 320 330 340
340
pF1KB8 SMFQL
: :..
NP_848 STFSI
350
>>NP_001116513 (OMIM: 601267) C-C chemokine receptor typ (374 aa)
initn: 541 init1: 383 opt: 682 Z-score: 653.1 bits: 129.4 E(85289): 1.2e-29
Smith-Waterman score: 682; 36.2% identity (73.0% similar) in 293 aa overlap (17-299:27-316)
10 20 30 40
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQ-DFLQFSKVFLPCMYLVVFVCGLVGN
: . :. : :.. .:: .: .::. :.:::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 SLVLVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIY
::..: : .::. :::..:.:: ..::.:. :::.::... .:::::..::: . :.:
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 TINFYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIY
:... ..... .:.::....:.: .. .:. .:.: :::.. :......:.: ::.
NP_001 HIGYFGGIFFIILLTIDRYLAIVHA--VFALKARTVTFGVVTSVITWLVAVFASVPGIIF
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 GNVFNLDKL-ICG-YHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQK-
. . :.. .:: : .. .. . ::. :::: :..::: :.::::. . .:
NP_001 TKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 HRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYT------IMVTEAIAYLR
::....:: .: :..: :.:.. .. .: :...... . : .:::.... .
NP_001 HRAVRVIFTIMIVYFLFWTPYNIVILL-NTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 ACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMF
:.::..::::. :::. :
NP_001 CCINPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGKG
300 310 320 330 340 350
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 540 init1: 383 opt: 681 Z-score: 652.3 bits: 129.2 E(85289): 1.4e-29
Smith-Waterman score: 681; 36.1% identity (73.2% similar) in 291 aa overlap (17-297:27-314)
10 20 30 40
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQ-DFLQFSKVFLPCMYLVVFVCGLVGN
: . :. : :.. .:: .: .::. :.:::
XP_011 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 SLVLVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIY
::..: : .::. :::..:.:: ..::.:. :::.::... .:::::..::: . :.:
XP_011 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 TINFYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIY
:... ..... .:.::....:.:. . .:. .:.: :::.. :......:.: ::.
XP_011 HIGYFGGIFFIILLTIDRYLAIVHAV--FALKARTVTFGVVTSVITWLVAVFASVPGIIF
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 GNVFNLDKL-ICG-YHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQK-
. . :.. .:: : .. .. . ::. :::: :..::: :.::::. . .:
XP_011 TKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 HRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYT------IMVTEAIAYLR
::....:: .: :..: :.:.. .. .: :...... . : .:::.... .
XP_011 HRAVRVIFTIMIVYFLFWTPYNIVILL-NTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 ACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMF
:.::..::::. :::.
XP_011 CCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPSTGEQEVS
300 310 320 330 340 350
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 540 init1: 383 opt: 681 Z-score: 652.3 bits: 129.2 E(85289): 1.4e-29
Smith-Waterman score: 681; 36.1% identity (73.2% similar) in 291 aa overlap (17-297:27-314)
10 20 30 40
pF1KB8 MAEHDYHEDYGFSSFNDSSQEEHQ-DFLQFSKVFLPCMYLVVFVCGLVGN
: . :. : :.. .:: .: .::. :.:::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 SLVLVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIY
::..: : .::. :::..:.:: ..::.:. :::.::... .:::::..::: . :.:
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 TINFYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIY
:... ..... .:.::....:.:. . .:. .:.: :::.. :......:.: ::.
NP_001 HIGYFGGIFFIILLTIDRYLAIVHAV--FALKARTVTFGVVTSVITWLVAVFASVPGIIF
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 GNVFNLDKL-ICG-YHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQK-
. . :.. .:: : .. .. . ::. :::: :..::: :.::::. . .:
NP_001 TKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 HRSLKIIFLVMAVFLLTQMPFNLMKFIRSTHWEYYAMTSFHYT------IMVTEAIAYLR
::....:: .: :..: :.:.. .. .: :...... . : .:::.... .
NP_001 HRAVRVIFTIMIVYFLFWTPYNIVILL-NTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 ACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMF
:.::..::::. :::.
NP_001 CCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPSTGEQEVS
300 310 320 330 340 350
>>NP_003458 (OMIM: 162643,193670) C-X-C chemokine recept (352 aa)
initn: 632 init1: 377 opt: 674 Z-score: 645.9 bits: 128.0 E(85289): 3.1e-29
Smith-Waterman score: 683; 33.0% identity (69.8% similar) in 348 aa overlap (5-331:11-352)
10 20 30 40 50
pF1KB8 MAEHDYHEDYGFSSFNDSSQEE--HQDFLQFSKVFLPCMYLVVFVCGLVGNSLV
.: :..: ... :: .: ... .:.:.::: .: ..:. :.:::.::
NP_003 MEGISIYTSDNYTEEMGSGDY-DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LVISIFYHKLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTIN
... . .::.:.:: . ..: .:::.:: :::::: .. .: ::. .::.. :::.:
NP_003 ILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FYTSMLILTCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNV
.:.:.:::. :..::....:.::. .:. ... ::. . .:. .::...:..:..::
NP_003 LYSSVLILAFISLDRYLAIVHATN--SQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 FNLD-KLICG-YHDEAISTVVLATQ-MTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRS
. : . :: .. . . .::. : . .:..:: .... :: .::. : :. : ::...
NP_003 SEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 LKIIFLVMAVFLLTQMP---------FNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLR
:: ... .:. .: : :...:.. :. .. : : .:::.:...
NP_003 LKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGC-EFE--NTVHKWISITEALAFFH
240 250 260 270 280 290
290 300 310 320 330
pF1KB8 ACLNPVLYAFVSLKFRKNFWKLVKDIGCLPYLGV-------SHQWKSSEDNSKTFSASHN
::::.::::.. ::. . . . ... : . .:. :.:..:..: .:
NP_003 CCLNPILYAFLGAKFKTSAQHALTSVSRGSSLKILSKGKRGGHSSVSTESESSSFHSS
300 310 320 330 340 350
340
pF1KB8 VEATSMFQL
342 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:43:08 2016 done: Fri Nov 4 15:43:09 2016
Total Scan time: 6.520 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]