FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8798, 336 aa
  1>>>pF1KB8798 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5633+/-0.00128; mu= 14.9434+/- 0.076
 mean_var=93.9180+/-23.998, 0's: 0 Z-trim(100.2): 165  B-trim: 375 in 1/50
 Lambda= 0.132343
 statistics sampled from 5838 (6025) to 5838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.503), E-opt: 0.2 (0.185), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS14259.1 GPR82 gene_id:27197|Hs108|chrX         ( 336) 2190 429.2 2.4e-120


>>CCDS14259.1 GPR82 gene_id:27197|Hs108|chrX              (336 aa)
 initn: 2190 init1: 2190 opt: 2190  Z-score: 2274.1  bits: 429.2 E(32554): 2.4e-120
Smith-Waterman score: 2190; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KB8 MNNNTTCIQPSMISSMALPIIYILLCIVGVFGNTLSQWIFLTKIGKKTSTHIYLSHLVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNNNTTCIQPSMISSMALPIIYILLCIVGVFGNTLSQWIFLTKIGKKTSTHIYLSHLVTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NLLVCSAMPFMSIYFLKGFQWEYQSAQCRVVNFLGTLSMHASMFVSLLILSWIAISRYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NLLVCSAMPFMSIYFLKGFQWEYQSAQCRVVNFLGTLSMHASMFVSLLILSWIAISRYAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LMQKDSSQETTSCYEKIFYGHLLKKFRQPNFARKLCIYIWGVVLGIIIPVTVYYSVIEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LMQKDSSQETTSCYEKIFYGHLLKKFRQPNFARKLCIYIWGVVLGIIIPVTVYYSVIEAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EGEESLCYNRQMELGAMISQIAGLIGTTFIGFSFLVVLTSYYSFVSHLRKIRTCTSIMEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EGEESLCYNRQMELGAMISQIAGLIGTTFIGFSFLVVLTSYYSFVSHLRKIRTCTSIMEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DLTYSSVKRHLLVIQILLIVCFLPYSIFKPIFYVLHQRDNCQQLNYLIETKNILTCLASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLTYSSVKRHLLVIQILLIVCFLPYSIFKPIFYVLHQRDNCQQLNYLIETKNILTCLASA
              250       260       270       280       290       300

              310       320       330      
pF1KB8 RSSTDPIIFLLLDKTFKKTLYNLFTKSNSAHMQSYG
       ::::::::::::::::::::::::::::::::::::
CCDS14 RSSTDPIIFLLLDKTFKKTLYNLFTKSNSAHMQSYG
              310       320       330      




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:41:58 2016 done: Fri Nov  4 15:41:59 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]