Result of FASTA (omim) for
pF1KB8794
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8794, 330 aa
1>>>pF1KB8794 330 - 330 aa - 330 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8478+/-0.000331; mu= 20.9143+/- 0.021
mean_var=127.5948+/-32.216, 0's: 0 Z-trim(116.8): 347 B-trim: 1537 in 1/50
Lambda= 0.113542
statistics sampled from 27709 (28250) to 27709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.331), width: 16
Scan time: 6.200
The best scores are: opt bits E(85289)
NP_005272 (OMIM: 600241) G-protein coupled recepto ( 330) 2199 371.3 1.5e-102
NP_005275 (OMIM: 600553) G-protein coupled recepto ( 362) 1294 223.2 6.8e-58
NP_001273028 (OMIM: 600553) G-protein coupled rece ( 377) 1294 223.2 6.9e-58
NP_005279 (OMIM: 600752) G-protein coupled recepto ( 334) 1276 220.2 5e-57
XP_005266417 (OMIM: 600752) PREDICTED: G-protein c ( 175) 786 139.5 5.1e-33
XP_011526723 (OMIM: 605110) PREDICTED: lysophospha ( 351) 478 89.5 1.2e-17
XP_016882958 (OMIM: 605110) PREDICTED: lysophospha ( 351) 478 89.5 1.2e-17
NP_004711 (OMIM: 605110) lysophosphatidic acid rec ( 351) 478 89.5 1.2e-17
XP_016882957 (OMIM: 605110) PREDICTED: lysophospha ( 351) 478 89.5 1.2e-17
NP_036284 (OMIM: 605106) lysophosphatidic acid rec ( 353) 466 87.5 4.5e-17
NP_001307659 (OMIM: 601974) sphingosine 1-phosphat ( 382) 444 84.0 5.7e-16
NP_001391 (OMIM: 601974) sphingosine 1-phosphate r ( 382) 444 84.0 5.7e-16
XP_016869872 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869886 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869873 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869890 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869889 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869884 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869881 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869880 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_005251839 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869875 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869893 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869879 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869874 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_005251838 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869877 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869878 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869876 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869892 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869891 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869888 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869887 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
NP_476500 (OMIM: 602282) lysophosphatidic acid rec ( 364) 442 83.6 7e-16
XP_016869882 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
NP_001392 (OMIM: 602282) lysophosphatidic acid rec ( 364) 442 83.6 7e-16
XP_016869895 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869885 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869896 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869883 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
XP_016869894 (OMIM: 602282) PREDICTED: lysophospha ( 364) 442 83.6 7e-16
NP_005217 (OMIM: 601965) sphingosine 1-phosphate r ( 378) 398 76.4 1.1e-13
NP_004221 (OMIM: 605111,610419,610419) sphingosine ( 353) 394 75.7 1.6e-13
NP_001159687 (OMIM: 605146) sphingosine 1-phosphat ( 398) 389 75.0 3e-13
NP_110387 (OMIM: 605146) sphingosine 1-phosphate r ( 398) 389 75.0 3e-13
NP_003766 (OMIM: 603751) sphingosine 1-phosphate r ( 384) 384 74.1 5.2e-13
XP_011538931 (OMIM: 605051) PREDICTED: cannabinoid ( 360) 381 73.6 7.1e-13
XP_016855750 (OMIM: 605051) PREDICTED: cannabinoid ( 360) 381 73.6 7.1e-13
NP_001832 (OMIM: 605051) cannabinoid receptor 2 [H ( 360) 381 73.6 7.1e-13
NP_149421 (OMIM: 114610) cannabinoid receptor 1 is ( 439) 307 61.6 3.5e-09
>>NP_005272 (OMIM: 600241) G-protein coupled receptor 3 (330 aa)
initn: 2199 init1: 2199 opt: 2199 Z-score: 1962.0 bits: 371.3 E(85289): 1.5e-102
Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)
10 20 30 40 50 60
pF1KB8 MMWGAGSPLAWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSCENAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MMWGAGSPLAWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSCENAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VVAIIVGTPAFRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIGSAEMSLVLVGVLAMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVAIIVGTPAFRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIGSAEMSLVLVGVLAMAF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LTTCGVVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTTCGVVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ATRKGIATLAVVLGAFAACWLPFTVYCLLGDAHSPPLYTYLTLLPATYNSMINPIIYAFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ATRKGIATLAVVLGAFAACWLPFTVYCLLGDAHSPPLYTYLTLLPATYNSMINPIIYAFR
250 260 270 280 290 300
310 320 330
pF1KB8 NQDVQKVLWAVCCCCSSSKIPFRSRSPSDV
::::::::::::::::::::::::::::::
NP_005 NQDVQKVLWAVCCCCSSSKIPFRSRSPSDV
310 320 330
>>NP_005275 (OMIM: 600553) G-protein coupled receptor 6 (362 aa)
initn: 1369 init1: 1272 opt: 1294 Z-score: 1160.4 bits: 223.2 E(85289): 6.8e-58
Smith-Waterman score: 1294; 59.5% identity (83.7% similar) in 331 aa overlap (3-330:36-362)
10 20
pF1KB8 MMWGAGSPLAWLSAG---SGNVNVSSVGPAEG
:: . : :.:: .:....:: : :
NP_005 ASLNDSQVVVVAAEGAAAAATAAGGPDTGEWGPPAAAA-LGAGGGANGSLELSSQLSA-G
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB8 PTGPAAPLPSPKAWDVVLCISGTLVSCENALVVAIIVGTPAFRAPMFLLVGSLAVADLLA
: :. ::. . :::.::.:::... :::::::.:..:::.:.:::.::::::.:::::
NP_005 P--PGLLLPAVNPWDVLLCVSGTVIAGENALVVALIASTPALRTPMFVLVGSLATADLLA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB8 GLGLVLHFAAVFCIGSAEMSLVLVGVLAMAFTASIGSLLAITVDRYLSLYNALTYYSETT
: ::.:::. . . : .::. :: :. .:.::..:::::::::::::::::::::. :
NP_005 GCGLILHFVFQYLVPSETVSLLTVGFLVASFAASVSSLLAITVDRYLSLYNALTYYSRRT
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 VTRTYVMLALVWGGALGLGLLPVLAWNCLDGLTTCGVVYPLSKNHLVVLAIAFFMVFGIM
. ....:: .: .:::::::::.:::: ..:.:: ::...:...:. :::::::::
NP_005 LLGVHLLLAATWTVSLGLGLLPVLGWNCLAERAACSVVRPLARSHVALLSAAFFMVFGIM
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 LQLYAQICRIVCRHAQQIALQRHLLPASHYVATRKGIATLAVVLGAFAACWLPFTVYCLL
:.::..::..: :::.:::::.: : : .:::::..:::::::.:.: ::::..::..
NP_005 LHLYVRICQVVWRHAHQIALQQHCLAPPHLAATRKGVGTLAVVLGTFGASWLPFAIYCVV
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 GDAHSPPLYTYLTLLPATYNSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSD
:. ..: .::: :::::::::::::::::::::..:..:: . : : .::.::::::::.
NP_005 GSHEDPAVYTYATLLPATYNSMINPIIYAFRNQEIQRALWLLLCGCFQSKVPFRSRSPSE
310 320 330 340 350 360
330
pF1KB8 V
:
NP_005 V
>>NP_001273028 (OMIM: 600553) G-protein coupled receptor (377 aa)
initn: 1369 init1: 1272 opt: 1294 Z-score: 1160.2 bits: 223.2 E(85289): 6.9e-58
Smith-Waterman score: 1294; 59.5% identity (83.7% similar) in 331 aa overlap (3-330:51-377)
10 20
pF1KB8 MMWGAGSPLAWLSAG---SGNVNVSSVGPAEG
:: . : :.:: .:....:: : :
NP_001 ASLNDSQVVVVAAEGAAAAATAAGGPDTGEWGPPAAAA-LGAGGGANGSLELSSQLSA-G
30 40 50 60 70
30 40 50 60 70 80
pF1KB8 PTGPAAPLPSPKAWDVVLCISGTLVSCENALVVAIIVGTPAFRAPMFLLVGSLAVADLLA
: :. ::. . :::.::.:::... :::::::.:..:::.:.:::.::::::.:::::
NP_001 P--PGLLLPAVNPWDVLLCVSGTVIAGENALVVALIASTPALRTPMFVLVGSLATADLLA
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB8 GLGLVLHFAAVFCIGSAEMSLVLVGVLAMAFTASIGSLLAITVDRYLSLYNALTYYSETT
: ::.:::. . . : .::. :: :. .:.::..:::::::::::::::::::::. :
NP_001 GCGLILHFVFQYLVPSETVSLLTVGFLVASFAASVSSLLAITVDRYLSLYNALTYYSRRT
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB8 VTRTYVMLALVWGGALGLGLLPVLAWNCLDGLTTCGVVYPLSKNHLVVLAIAFFMVFGIM
. ....:: .: .:::::::::.:::: ..:.:: ::...:...:. :::::::::
NP_001 LLGVHLLLAATWTVSLGLGLLPVLGWNCLAERAACSVVRPLARSHVALLSAAFFMVFGIM
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 LQLYAQICRIVCRHAQQIALQRHLLPASHYVATRKGIATLAVVLGAFAACWLPFTVYCLL
:.::..::..: :::.:::::.: : : .:::::..:::::::.:.: ::::..::..
NP_001 LHLYVRICQVVWRHAHQIALQQHCLAPPHLAATRKGVGTLAVVLGTFGASWLPFAIYCVV
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 GDAHSPPLYTYLTLLPATYNSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSD
:. ..: .::: :::::::::::::::::::::..:..:: . : : .::.::::::::.
NP_001 GSHEDPAVYTYATLLPATYNSMINPIIYAFRNQEIQRALWLLLCGCFQSKVPFRSRSPSE
320 330 340 350 360 370
330
pF1KB8 V
:
NP_001 V
>>NP_005279 (OMIM: 600752) G-protein coupled receptor 12 (334 aa)
initn: 1255 init1: 1255 opt: 1276 Z-score: 1144.8 bits: 220.2 E(85289): 5e-57
Smith-Waterman score: 1276; 57.1% identity (82.8% similar) in 326 aa overlap (5-330:10-334)
10 20 30 40 50
pF1KB8 MMWGAGSPLAWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVS
.: : .:.:.... :.:.. .. :. : . ::.::: ::::.:
NP_005 MNEDLKVNLSGLPRDYLDAAAAE-NISAAVSSRVPAVEPEPELVVNPWDIVLCTSGTLIS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CENALVVAIIVGTPAFRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIGSAEMSLVLVGV
::::.:: :: .:..:::::::.::::.::::::.::. .:. .. . : .:: .:.
NP_005 CENAIVVLIIFHNPSLRAPMFLLIGSLALADLLAGIGLITNFVFAYLLQSEATKLVTIGL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 LAMAFTASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAW
.. .:.::. :::::::::::::: ::::.:: ::: :::::...:: .. ::::::..:
NP_005 IVASFSASVCSLLAITVDRYLSLYYALTYHSERTVTFTYVMLVMLWGTSICLGLLPVMGW
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 NCLDGLTTCGVVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLP
::: .::.:: ::.::. ..:...:...:..::::: :::.:: :::.:::::.:.:
NP_005 NCLRDESTCSVVRPLTKNNAAILSVSFLFMFALMLQLYIQICKIVMRHAHQIALQHHFLA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 ASHYVATRKGIATLAVVLGAFAACWLPFTVYCLLGDAHSPPLYTYLTLLPATYNSMINPI
.::::.::::..:::..::.:::::.:::.: :..: : .::: :::::::::.:::.
NP_005 TSHYVTTRKGVSTLAIILGTFAACWMPFTLYSLIADYTYPSIYTYATLLPATYNSIINPV
240 250 260 270 280 290
300 310 320 330
pF1KB8 IYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSDV
:::::::..::.: .:: : :.. :.::::::
NP_005 IYAFRNQEIQKALCLICCGCIPSSLAQRARSPSDV
300 310 320 330
>>XP_005266417 (OMIM: 600752) PREDICTED: G-protein coupl (175 aa)
initn: 786 init1: 786 opt: 786 Z-score: 713.8 bits: 139.5 E(85289): 5.1e-33
Smith-Waterman score: 786; 60.6% identity (86.9% similar) in 175 aa overlap (156-330:1-175)
130 140 150 160 170 180
pF1KB8 SLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLTTCG
::...:: .. ::::::..:::: .::.
XP_005 MLVMLWGTSICLGLLPVMGWNCLRDESTCS
10 20 30
190 200 210 220 230 240
pF1KB8 VVYPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVATRKG
:: ::.::. ..:...:...:..::::: :::.:: :::.:::::.:.: .::::.::::
XP_005 VVRPLTKNNAAILSVSFLFMFALMLQLYIQICKIVMRHAHQIALQHHFLATSHYVTTRKG
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 IATLAVVLGAFAACWLPFTVYCLLGDAHSPPLYTYLTLLPATYNSMINPIIYAFRNQDVQ
..:::..::.:::::.:::.: :..: : .::: :::::::::.:::.:::::::..:
XP_005 VSTLAIILGTFAACWMPFTLYSLIADYTYPSIYTYATLLPATYNSIINPVIYAFRNQEIQ
100 110 120 130 140 150
310 320 330
pF1KB8 KVLWAVCCCCSSSKIPFRSRSPSDV
:.: .:: : :.. :.::::::
XP_005 KALCLICCGCIPSSLAQRARSPSDV
160 170
>>XP_011526723 (OMIM: 605110) PREDICTED: lysophosphatidi (351 aa)
initn: 380 init1: 175 opt: 478 Z-score: 438.1 bits: 89.5 E(85289): 1.2e-17
Smith-Waterman score: 478; 33.8% identity (64.5% similar) in 290 aa overlap (40-315:30-314)
10 20 30 40 50 60
pF1KB8 AWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSC----ENALVVAII
:: :::. : :: : ::.: :
XP_011 MVIMGQCYYNETIGFFYNNSGKELSSHWRPK--DVVVVALGLTVSVLVLLTNLLVIAAI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VGTPAFRAPMFLLVGSLAVADLLAGLG---LVLHFAAVFCIGSAEMSLVLVGVLAMAFTA
... :. :.. :.:.::.:::.::.. :..: . : : .. :.: ..::
XP_011 ASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 SIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLT
:...::::.:.:. :.. :. .:. :. .... :: .::::::::. .:.:: .:
XP_011 SVATLLAIAVERHRSVM-AVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLCALD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 TCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVA
:. . :: :...:.: :.. ..:: .:. .:..: : :..:..: . : . .
XP_011 RCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHP-RYRET
180 190 200 210 220 230
250 260 270 280 290
pF1KB8 TRKGIATLAVVLGAFAACWLPFTVYCLLG-----DAHSPPLYTYLTLLPATYNSMINPII
: . . :....::::..:: : : :: . . . :. :: : ::..: .
XP_011 TLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLLL-AEANSLVNAAV
240 250 260 270 280 290
300 310 320 330
pF1KB8 YAFRNQDVQKVLWAV-CCCCSSSKIPFRSRSPSDV
:. :. ...... . :: :
XP_011 YSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL
300 310 320 330 340 350
>>XP_016882958 (OMIM: 605110) PREDICTED: lysophosphatidi (351 aa)
initn: 380 init1: 175 opt: 478 Z-score: 438.1 bits: 89.5 E(85289): 1.2e-17
Smith-Waterman score: 478; 33.8% identity (64.5% similar) in 290 aa overlap (40-315:30-314)
10 20 30 40 50 60
pF1KB8 AWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSC----ENALVVAII
:: :::. : :: : ::.: :
XP_016 MVIMGQCYYNETIGFFYNNSGKELSSHWRPK--DVVVVALGLTVSVLVLLTNLLVIAAI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VGTPAFRAPMFLLVGSLAVADLLAGLG---LVLHFAAVFCIGSAEMSLVLVGVLAMAFTA
... :. :.. :.:.::.:::.::.. :..: . : : .. :.: ..::
XP_016 ASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 SIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLT
:...::::.:.:. :.. :. .:. :. .... :: .::::::::. .:.:: .:
XP_016 SVATLLAIAVERHRSVM-AVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLCALD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 TCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVA
:. . :: :...:.: :.. ..:: .:. .:..: : :..:..: . : . .
XP_016 RCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHP-RYRET
180 190 200 210 220 230
250 260 270 280 290
pF1KB8 TRKGIATLAVVLGAFAACWLPFTVYCLLG-----DAHSPPLYTYLTLLPATYNSMINPII
: . . :....::::..:: : : :: . . . :. :: : ::..: .
XP_016 TLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLLL-AEANSLVNAAV
240 250 260 270 280 290
300 310 320 330
pF1KB8 YAFRNQDVQKVLWAV-CCCCSSSKIPFRSRSPSDV
:. :. ...... . :: :
XP_016 YSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL
300 310 320 330 340 350
>>NP_004711 (OMIM: 605110) lysophosphatidic acid recepto (351 aa)
initn: 380 init1: 175 opt: 478 Z-score: 438.1 bits: 89.5 E(85289): 1.2e-17
Smith-Waterman score: 478; 33.8% identity (64.5% similar) in 290 aa overlap (40-315:30-314)
10 20 30 40 50 60
pF1KB8 AWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSC----ENALVVAII
:: :::. : :: : ::.: :
NP_004 MVIMGQCYYNETIGFFYNNSGKELSSHWRPK--DVVVVALGLTVSVLVLLTNLLVIAAI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VGTPAFRAPMFLLVGSLAVADLLAGLG---LVLHFAAVFCIGSAEMSLVLVGVLAMAFTA
... :. :.. :.:.::.:::.::.. :..: . : : .. :.: ..::
NP_004 ASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 SIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLT
:...::::.:.:. :.. :. .:. :. .... :: .::::::::. .:.:: .:
NP_004 SVATLLAIAVERHRSVM-AVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLCALD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 TCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVA
:. . :: :...:.: :.. ..:: .:. .:..: : :..:..: . : . .
NP_004 RCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHP-RYRET
180 190 200 210 220 230
250 260 270 280 290
pF1KB8 TRKGIATLAVVLGAFAACWLPFTVYCLLG-----DAHSPPLYTYLTLLPATYNSMINPII
: . . :....::::..:: : : :: . . . :. :: : ::..: .
NP_004 TLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLLL-AEANSLVNAAV
240 250 260 270 280 290
300 310 320 330
pF1KB8 YAFRNQDVQKVLWAV-CCCCSSSKIPFRSRSPSDV
:. :. ...... . :: :
NP_004 YSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL
300 310 320 330 340 350
>>XP_016882957 (OMIM: 605110) PREDICTED: lysophosphatidi (351 aa)
initn: 380 init1: 175 opt: 478 Z-score: 438.1 bits: 89.5 E(85289): 1.2e-17
Smith-Waterman score: 478; 33.8% identity (64.5% similar) in 290 aa overlap (40-315:30-314)
10 20 30 40 50 60
pF1KB8 AWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSC----ENALVVAII
:: :::. : :: : ::.: :
XP_016 MVIMGQCYYNETIGFFYNNSGKELSSHWRPK--DVVVVALGLTVSVLVLLTNLLVIAAI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VGTPAFRAPMFLLVGSLAVADLLAGLG---LVLHFAAVFCIGSAEMSLVLVGVLAMAFTA
... :. :.. :.:.::.:::.::.. :..: . : : .. :.: ..::
XP_016 ASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 SIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLT
:...::::.:.:. :.. :. .:. :. .... :: .::::::::. .:.:: .:
XP_016 SVATLLAIAVERHRSVM-AVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLCALD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 TCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVA
:. . :: :...:.: :.. ..:: .:. .:..: : :..:..: . : . .
XP_016 RCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHP-RYRET
180 190 200 210 220 230
250 260 270 280 290
pF1KB8 TRKGIATLAVVLGAFAACWLPFTVYCLLG-----DAHSPPLYTYLTLLPATYNSMINPII
: . . :....::::..:: : : :: . . . :. :: : ::..: .
XP_016 TLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLLL-AEANSLVNAAV
240 250 260 270 280 290
300 310 320 330
pF1KB8 YAFRNQDVQKVLWAV-CCCCSSSKIPFRSRSPSDV
:. :. ...... . :: :
XP_016 YSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL
300 310 320 330 340 350
>>NP_036284 (OMIM: 605106) lysophosphatidic acid recepto (353 aa)
initn: 406 init1: 180 opt: 466 Z-score: 427.5 bits: 87.5 E(85289): 4.5e-17
Smith-Waterman score: 466; 32.1% identity (63.6% similar) in 308 aa overlap (45-330:32-327)
20 30 40 50 60 70
pF1KB8 GSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTL----VSCENALVVAIIVGTPA
.:::. ::. . :.::.: .. .
NP_036 NECHYDKHMDFFYNRSNTDTVDDWTGTKLVIVLCV-GTFFCLFIFFSNSLVIAAVIKNRK
10 20 30 40 50 60
80 90 100 110 120
pF1KB8 FRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIGSAEMSLVLV------GVLAMAFTASI
:. :.. :...::.::..::.. :. .: : . .:.. :.: ..:::.
NP_036 FHFPFYYLLANLAAADFFAGIAYVF---LMFNTGPVSKTLTVNRWFLRQGLLDSSLTASL
70 80 90 100 110
130 140 150 160 170 180
pF1KB8 GSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCLDGLTTC
.::.:.:.:..:.. . .:. : :. ... :::. :. .: .:.:.:::: ....:
NP_036 TNLLVIAVERHMSIMR-MRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISAC
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 GVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPA-SHYVAT
. . :. :...:: ... .:.: ::. .: .: : :... .:. : . :. .
NP_036 SSLAPIYSRSYLVFWTVSNLMAFLIMVVVYLRIYVYVKRKTN--VLSPHTSGSISRRRTP
180 190 200 210 220 230
250 260 270 280 290
pF1KB8 RKGIATLAVVLGAFAACWLPFTVYCLL--------GDAHSPPLYTYLTLLPATYNSMINP
: . :. .:::::..:: : : :: : : . :.:: ::..::
NP_036 MKLMKTVMTVLGAFVVCWTPGLVVLLLDGLNCRQCGVQHVKRWFLLLALL----NSVVNP
240 250 260 270 280 290
300 310 320 330
pF1KB8 IIYAFRNQDVQKVLWAVCCCCSSSKIPFR--SRSPSDV
:::.....:. .. . :: :. . : : :: :: :
NP_036 IIYSYKDEDMYGTMKKMICCFSQEN-PERRPSRIPSTVLSRSDTGSQYIEDSISQGAVCN
300 310 320 330 340
NP_036 KSTS
350
330 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:39:45 2016 done: Fri Nov 4 15:39:46 2016
Total Scan time: 6.200 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]