FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8780, 259 aa
  1>>>pF1KB8780 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6957+/-0.000662; mu= 14.1871+/- 0.040
 mean_var=100.5446+/-20.396, 0's: 0 Z-trim(113.6): 55  B-trim: 0 in 0/52
 Lambda= 0.127907
 statistics sampled from 14173 (14227) to 14173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.437), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS5901.1 LRRC61 gene_id:65999|Hs108|chr7         ( 259) 1750 332.5 1.7e-91


>>CCDS5901.1 LRRC61 gene_id:65999|Hs108|chr7              (259 aa)
 initn: 1750 init1: 1750 opt: 1750  Z-score: 1756.0  bits: 332.5 E(32554): 1.7e-91
Smith-Waterman score: 1750; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KB8 MDPPAEKPGEAGGLQITPQLLKSRTGEFSLESILLLKLRGLGLADLGCLGECLGLEWLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MDPPAEKPGEAGGLQITPQLLKSRTGEFSLESILLLKLRGLGLADLGCLGECLGLEWLDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLATCENLQSLNAAGNLLATPGQLQCLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLATCENLQSLNAAGNLLATPGQLQCLAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LPCLEYLRLRDPLARLSNPLCASPSYWAAVRELLPGLKVIDGERVIGRGSEFYQLCRDLD
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS59 LPCLEYLRLRDPLARLSNPLCANPSYWAAVRELLPGLKVIDGERVIGRGSEFYQLCRDLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSLRPSSSPGPRATEAQPWVEPGYWESWPSRSSSILEEACRQFQDTLQECWDLDRQASDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSLRPSSSPGPRATEAQPWVEPGYWESWPSRSSSILEEACRQFQDTLQECWDLDRQASDS
              190       200       210       220       230       240

              250         
pF1KB8 LAQAEQVLSSAGPTSSFVF
       :::::::::::::::::::
CCDS59 LAQAEQVLSSAGPTSSFVF
              250         




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:32:38 2016 done: Fri Nov  4 15:32:38 2016
 Total Scan time:  2.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]