FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8778, 258 aa
  1>>>pF1KB8778 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6325+/-0.000692; mu= 7.1137+/- 0.042
 mean_var=178.7044+/-35.560, 0's: 0 Z-trim(117.2): 5  B-trim: 0 in 0/53
 Lambda= 0.095942
 statistics sampled from 17955 (17959) to 17955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.552), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS7418.1 FGFBP3 gene_id:143282|Hs108|chr10       ( 258) 1817 262.4 2.3e-70


>>CCDS7418.1 FGFBP3 gene_id:143282|Hs108|chr10            (258 aa)
 initn: 1817 init1: 1817 opt: 1817  Z-score: 1376.8  bits: 262.4 E(32554): 2.3e-70
Smith-Waterman score: 1817; 99.6% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB8 MTPPKLRASLSPSLLLLLSGCLLAAARREKGAASNVAEPVPGPTGGSSGRFLSPEQHACS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTPPKLRASLSPSLLLLLSGCLLAAARREKGAASNVAEPVPGPTGGSSGRFLSPEQHACS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 WQLLLPAPEAAAGSELALRCQSPDGARHQCAYRGHPERCAAYAARRTHFWKQVLGGLRKK
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS74 WQLLLPAPEAAAGSELALRCQSPDGARHQCAYRGHPERCAAYAARRAHFWKQVLGGLRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RRPCHDPAPLQARLCAGKKGHGAELRLVPRASPPARPTVAGFAGESKPRARNRGRTRERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RRPCHDPAPLQARLCAGKKGHGAELRLVPRASPPARPTVAGFAGESKPRARNRGRTRERA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SGPAAGTPPPQSAPPKENPSERKTNEGKRKAALVPNEERPMGTGPDPDGLDGNAELTETY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGPAAGTPPPQSAPPKENPSERKTNEGKRKAALVPNEERPMGTGPDPDGLDGNAELTETY
              190       200       210       220       230       240

              250        
pF1KB8 CAEKWHSLCNFFVNFWNG
       ::::::::::::::::::
CCDS74 CAEKWHSLCNFFVNFWNG
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:31:07 2016 done: Fri Nov  4 15:31:08 2016
 Total Scan time:  2.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]