FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8771, 234 aa
  1>>>pF1KB8771 234 - 234 aa - 234 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3599+/-0.000275; mu= 4.1199+/- 0.017
 mean_var=213.9714+/-43.955, 0's: 0 Z-trim(127.2): 3  B-trim: 2251 in 2/57
 Lambda= 0.087679
 statistics sampled from 54892 (54897) to 54892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.873), E-opt: 0.2 (0.644), width:  16
 Scan time:  8.470

The best scores are:                                      opt bits E(85289)
NP_115743 (OMIM: 615250) zinc finger BED domain-co ( 234) 1663 221.3 1.1e-57
NP_001316493 (OMIM: 615250) zinc finger BED domain ( 234) 1663 221.3 1.1e-57
NP_078784 (OMIM: 615246) zinc finger BED domain-co ( 218)  588 85.3 9.3e-17


>>NP_115743 (OMIM: 615250) zinc finger BED domain-contai  (234 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1156.3  bits: 221.3 E(85289): 1.1e-57
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB8 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB8 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
              190       200       210       220       230    

>>NP_001316493 (OMIM: 615250) zinc finger BED domain-con  (234 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1156.3  bits: 221.3 E(85289): 1.1e-57
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB8 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB8 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
              190       200       210       220       230    

>>NP_078784 (OMIM: 615246) zinc finger BED domain-contai  (218 aa)
 initn: 727 init1: 327 opt: 588  Z-score: 421.8  bits: 85.3 E(85289): 9.3e-17
Smith-Waterman score: 588; 52.7% identity (78.1% similar) in 169 aa overlap (27-193:37-203)

                   10        20        30        40        50      
pF1KB8     MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAP
                                     : ..  ::: : .. :. .:::: ::::::
NP_078 EEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNK-GTRFSEAWEYFHLAP
         10        20        30        40        50         60     

         60        70        80        90       100       110      
pF1KB8 GRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCP
       .: ::  ...:::::::.::.:::: ..::.:::.::.: ::.:::.:: :..      :
NP_078 ARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQD-P
          70        80        90       100       110       120     

        120         130       140       150       160       170    
pF1KB8 PPPGPA--AAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEE
        : ::   .. ::.:.:::::.:..:. .:.::.:. ::: :::  :::.:.:.:::.: 
NP_078 RPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEV
          130       140       150       160       170       180    

          180       190       200       210       220       230    
pF1KB8 ERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
       :::  . . ...::.:: :                                         
NP_078 ERAILEMKWKVRAEKEACQREKELPAAVHPFHFV                          
          190       200       210                                  




234 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:27:32 2016 done: Fri Nov  4 15:27:34 2016
 Total Scan time:  8.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]