FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8771, 234 aa
  1>>>pF1KB8771 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0148+/-0.000668; mu= 6.4691+/- 0.041
 mean_var=216.5761+/-42.884, 0's: 0 Z-trim(119.5): 5  B-trim: 193 in 1/54
 Lambda= 0.087150
 statistics sampled from 20746 (20751) to 20746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.637), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS4036.1 ZBED3 gene_id:84327|Hs108|chr5          ( 234) 1663 220.0 1.1e-57
CCDS2960.2 ZBED2 gene_id:79413|Hs108|chr3          ( 218)  588 84.8 4.9e-17


>>CCDS4036.1 ZBED3 gene_id:84327|Hs108|chr5               (234 aa)
 initn: 1663 init1: 1663 opt: 1663  Z-score: 1149.4  bits: 220.0 E(32554): 1.1e-57
Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB8 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCPPPPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEEERAAAQ
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB8 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
              190       200       210       220       230    

>>CCDS2960.2 ZBED2 gene_id:79413|Hs108|chr3               (218 aa)
 initn: 727 init1: 327 opt: 588  Z-score: 419.3  bits: 84.8 E(32554): 4.9e-17
Smith-Waterman score: 588; 52.7% identity (78.1% similar) in 169 aa overlap (27-193:37-203)

                   10        20        30        40        50      
pF1KB8     MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAP
                                     : ..  ::: : .. :. .:::: ::::::
CCDS29 EEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNK-GTRFSEAWEYFHLAP
         10        20        30        40        50         60     

         60        70        80        90       100       110      
pF1KB8 GRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCP
       .: ::  ...:::::::.::.:::: ..::.:::.::.: ::.:::.:: :..      :
CCDS29 ARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQD-P
          70        80        90       100       110       120     

        120         130       140       150       160       170    
pF1KB8 PPPGPA--AAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEE
        : ::   .. ::.:.:::::.:..:. .:.::.:. ::: :::  :::.:.:.:::.: 
CCDS29 RPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEV
          130       140       150       160       170       180    

          180       190       200       210       220       230    
pF1KB8 ERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
       :::  . . ...::.:: :                                         
CCDS29 ERAILEMKWKVRAEKEACQREKELPAAVHPFHFV                          
          190       200       210                                  




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:27:32 2016 done: Fri Nov  4 15:27:32 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]