FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8769, 233 aa
  1>>>pF1KB8769 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9895+/-0.000967; mu= 6.2150+/- 0.058
 mean_var=99.1746+/-19.596, 0's: 0 Z-trim(106.8): 32  B-trim: 8 in 1/51
 Lambda= 0.128788
 statistics sampled from 9207 (9224) to 9207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS9431.1 CCDC70 gene_id:83446|Hs108|chr13        ( 233) 1640 314.9 2.9e-86


>>CCDS9431.1 CCDC70 gene_id:83446|Hs108|chr13             (233 aa)
 initn: 1640 init1: 1640 opt: 1640  Z-score: 1662.1  bits: 314.9 E(32554): 2.9e-86
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB8 MATPPFRLIRKMFSFKVSRWMGLACFRSLAASSPSIRQKKLMHKLQEEKAFREEMKIFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MATPPFRLIRKMFSFKVSRWMGLACFRSLAASSPSIRQKKLMHKLQEEKAFREEMKIFRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KIEDFREEMWTFRGKIHAFRGQILGFWEEERPFWEEEKTFWKEEKSFWEMEKSFREEEKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KIEDFREEMWTFRGKIHAFRGQILGFWEEERPFWEEEKTFWKEEKSFWEMEKSFREEEKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FWKKYRTFWKEDKAFWKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEGEKALWED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FWKKYRTFWKEDKAFWKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEGEKALWED
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB8 KTSLWEEENALWEEERAFWMENNGHIAGEQMLEDGPHNANRGQRLLAFSRGRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KTSLWEEENALWEEERAFWMENNGHIAGEQMLEDGPHNANRGQRLLAFSRGRA
              190       200       210       220       230   




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:25:54 2016 done: Fri Nov  4 15:25:54 2016
 Total Scan time:  1.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]