FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8767, 225 aa
  1>>>pF1KB8767 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7677+/-0.000807; mu= 1.2333+/- 0.049
 mean_var=221.4545+/-44.283, 0's: 0 Z-trim(116.6): 12  B-trim: 0 in 0/55
 Lambda= 0.086185
 statistics sampled from 17256 (17264) to 17256 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS11756.1 SOCS3 gene_id:9021|Hs108|chr17         ( 225) 1521 200.4 7.6e-52


>>CCDS11756.1 SOCS3 gene_id:9021|Hs108|chr17              (225 aa)
 initn: 1521 init1: 1521 opt: 1521  Z-score: 1044.3  bits: 200.4 E(32554): 7.6e-52
Smith-Waterman score: 1521; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB8 MVTHSKFPAAGMSRPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVTHSKFPAAGMSRPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LKLVHHYMPPPGAPSFPSPPTEPSSEVPEQPSAQPLPGSPPRRAYYIYSGGEKIPLVLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LKLVHHYMPPPGAPSFPSPPTEPSSEVPEQPSAQPLPGSPPRRAYYIYSGGEKIPLVLSR
              130       140       150       160       170       180

              190       200       210       220     
pF1KB8 PLSSNVATLQHLCRKTVNGHLDSYEKVTQLPGPIREFLDQYDAPL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLSSNVATLQHLCRKTVNGHLDSYEKVTQLPGPIREFLDQYDAPL
              190       200       210       220     




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:24:55 2016 done: Fri Nov  4 15:24:56 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]