Result of FASTA (ccds) for
pF1KB8766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8766, 225 aa
1>>>pF1KB8766 225 - 225 aa - 225 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5808+/-0.00101; mu= 12.4238+/- 0.061
mean_var=71.1667+/-14.813, 0's: 0 Z-trim(104.5): 47 B-trim: 0 in 0/48
Lambda= 0.152032
statistics sampled from 7887 (7931) to 7887 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.244), width: 16
Scan time: 2.050
The best scores are: opt bits E(32554)
CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11 ( 225) 1493 336.6 7.7e-93
CCDS8255.2 KCTD14 gene_id:65987|Hs108|chr11 ( 255) 1493 336.6 8.6e-93
CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7 ( 288) 376 91.7 5.4e-19
CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7 ( 289) 376 91.7 5.4e-19
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 264 67.1 1.1e-11
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 254 64.9 5.6e-11
>>CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11 (225 aa)
initn: 1493 init1: 1493 opt: 1493 Z-score: 1780.2 bits: 336.6 E(32554): 7.7e-93
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DYLRTGQVPTQHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYSENLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DYLRTGQVPTQHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYSENLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKAVLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKAVLDN
130 140 150 160 170 180
190 200 210 220
pF1KB8 SDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFTWW
:::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFTWW
190 200 210 220
>>CCDS8255.2 KCTD14 gene_id:65987|Hs108|chr11 (255 aa)
initn: 1493 init1: 1493 opt: 1493 Z-score: 1779.4 bits: 336.6 E(32554): 8.6e-93
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:31-255)
10 20 30
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLA
::::::::::::::::::::::::::::::
CCDS82 MWQGCAVERPVGRMTSQTPLPQSPRPRRPTMSTVVELNVGGEFHTTTLGTLRKFPGSKLA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 EMFSSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPTQHIPEVYREAQFYEIKPLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EMFSSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPTQHIPEVYREAQFYEIKPLVK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 LLEDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLEDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 YYSEVLCFLQDKKMFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YYSEVLCFLQDKKMFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKR
190 200 210 220 230 240
220
pF1KB8 NEFHFNIYSFTFTWW
:::::::::::::::
CCDS82 NEFHFNIYSFTFTWW
250
>>CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7 (288 aa)
initn: 503 init1: 249 opt: 376 Z-score: 454.5 bits: 91.7 E(32554): 5.4e-19
Smith-Waterman score: 481; 39.1% identity (63.4% similar) in 238 aa overlap (4-224:52-288)
10 20 30
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMF
:: ::.:: :: :.::: . . :: ::
CCDS55 DAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 SSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPT-QHIPEVYREAQFYEIKPLVKLL
:. ::.:::.:::: .:.: .:..::.:..: ... ::.:::.: : ::.. :
CCDS55 SGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQL
90 100 110 120 130 140
100 110 120 130 140
pF1KB8 EDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAIT--ARKSSVLVCLVETEEQ-D
:.: . ::.: :. :: .: :...:: .:..:: .:. :: ... ::. . :
CCDS55 ENMQPLKGEKV-RQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPIT
150 160 170 180 190 200
150 160 170 180 190
pF1KB8 AYYSEVLCFLQ------DKKMFKSV----VKFGPWKAVLDNSDLMHCLEMDIKAQGYKVF
: .: :. : ..:. :.::::.:: : ::.::: :..::: :
CCDS55 PYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVD
210 220 230 240 250 260
200 210 220
pF1KB8 SKFYLTYPTKR-NEFHFN--IYSFTFTWW
. . . :... . :: : .::
CCDS55 HQCIGVCDKHLVNHYYCKRPIYEFKITW
270 280
>>CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7 (289 aa)
initn: 518 init1: 249 opt: 376 Z-score: 454.5 bits: 91.7 E(32554): 5.4e-19
Smith-Waterman score: 496; 39.3% identity (63.6% similar) in 239 aa overlap (4-225:52-289)
10 20 30
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMF
:: ::.:: :: :.::: . . :: ::
CCDS55 DAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 SSLAKASTDAEGRFFIDRPSTYFRPILDYLRTGQVPT-QHIPEVYREAQFYEIKPLVKLL
:. ::.:::.:::: .:.: .:..::.:..: ... ::.:::.: : ::.. :
CCDS55 SGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQL
90 100 110 120 130 140
100 110 120 130 140
pF1KB8 EDMPQIFGEQVSRKQFLLQVPGYSENLELMVRLARAEAIT--ARKSSVLVCLVETEEQ-D
:.: . ::.: :. :: .: :...:: .:..:: .:. :: ... ::. . :
CCDS55 ENMQPLKGEKV-RQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPIT
150 160 170 180 190 200
150 160 170 180 190
pF1KB8 AYYSEVLCFLQ------DKKMFKSV----VKFGPWKAVLDNSDLMHCLEMDIKAQGYKVF
: .: :. : ..:. :.::::.:: : ::.::: :..::: :
CCDS55 PYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVD
210 220 230 240 250 260
200 210 220
pF1KB8 SKFYLTYPTKR-NEFHFN--IYSFTFTWW
. . . :... . :: : .:::
CCDS55 HQCIGVCDKHLVNHYYCKRPIYEFKITWW
270 280
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 244 init1: 191 opt: 264 Z-score: 323.1 bits: 67.1 E(32554): 1.1e-11
Smith-Waterman score: 264; 29.1% identity (59.2% similar) in 206 aa overlap (1-198:10-205)
10 20 30 40 50
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDR
:. : :::::...::.: :: ..: : :. ::.. .. : .: .::::
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR
10 20 30 40 50 60
60 70 80 90 100
pF1KB8 PSTYFRPILDYLRTGQV--PT--QHIPEVYREAQFYEIKPLVKLLED----MPQIFGEQV
. :: .:..:::... : ... . .::.::.:.::.. :.: .:. :.:
CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SRKQFLLQVPGYSENLELMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKK
. . .. ::. . ... .::.. :.: : . :... ..: .
CCDS28 VELSSTRKLSKYSNPVAVIITQL---TITTKVHSLL------EGISNYFTKWNKHMMDTR
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 MFKSVVKFGPWKAVLDNSDLMHCLEMDIKAQGYKVFSKFYLTYPTKRNEFHFNIYSFTFT
. ::: . : .: .:. : ::. .
CCDS28 DCQVSFTFGPCDYHQEVSLRVHLMEY-ITKQGFTIRNTRVHHMSERANENTVEHNWTFCR
180 190 200 210 220 230
pF1KB8 WW
CCDS28 LARKTDD
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 255 init1: 200 opt: 254 Z-score: 310.6 bits: 64.9 E(32554): 5.6e-11
Smith-Waterman score: 254; 42.9% identity (73.5% similar) in 98 aa overlap (1-94:1-98)
10 20 30 40 50 60
pF1KB8 MSTVVELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPIL
:: . :::::...::.:.:: .:: : :. :::. .. :..: :::: . :: ::
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 DYLRTGQV--PT--QHIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVSRKQFLLQVPGYS
..:::... : :.. . :::.::...::.. :..
CCDS31 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ENLELMVRLARAEAITARKSSVLVCLVETEEQDAYYSEVLCFLQDKKMFKSVVKFGPWKA
CCDS31 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
130 140 150 160 170 180
225 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:24:27 2016 done: Fri Nov 4 15:24:28 2016
Total Scan time: 2.050 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]