FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8764, 218 aa
  1>>>pF1KB8764 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7513+/-0.000299; mu= 13.9241+/- 0.019
 mean_var=105.2884+/-21.252, 0's: 0 Z-trim(120.7): 9  B-trim: 699 in 1/53
 Lambda= 0.124992
 statistics sampled from 36381 (36392) to 36381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.427), width:  16
 Scan time:  6.940

The best scores are:                                      opt bits E(85289)
NP_078784 (OMIM: 615246) zinc finger BED domain-co ( 218) 1510 281.8   6e-76
NP_115743 (OMIM: 615250) zinc finger BED domain-co ( 234)  588 115.6 7.1e-26
NP_001316493 (OMIM: 615250) zinc finger BED domain ( 234)  588 115.6 7.1e-26


>>NP_078784 (OMIM: 615246) zinc finger BED domain-contai  (218 aa)
 initn: 1510 init1: 1510 opt: 1510  Z-score: 1484.5  bits: 281.8 E(85289): 6e-76
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB8 MMRREDEEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNKGTRFSEAWEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MMRREDEEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNKGTRFSEAWEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RQDPRPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 RQDPRPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERA
              130       140       150       160       170       180

              190       200       210        
pF1KB8 LEEVERAILEMKWKVRAEKEACQREKELPAAVHPFHFV
       ::::::::::::::::::::::::::::::::::::::
NP_078 LEEVERAILEMKWKVRAEKEACQREKELPAAVHPFHFV
              190       200       210        

>>NP_115743 (OMIM: 615250) zinc finger BED domain-contai  (234 aa)
 initn: 837 init1: 327 opt: 588  Z-score: 585.5  bits: 115.6 E(85289): 7.1e-26
Smith-Waterman score: 588; 52.7% identity (78.1% similar) in 169 aa overlap (37-203:27-193)

         10        20        30        40        50         60     
pF1KB8 EEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNK-GTRFSEAWEYFHLAP
                                     : ..  ::: : .. :. .:::: ::::::
NP_115     MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAP
                   10        20        30        40        50      

          70        80        90       100       110       120     
pF1KB8 ARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQD-P
       .: ::  ...:::::::.::.:::: ..::.:::.::.: ::.:::.:: :..      :
NP_115 GRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCP
         60        70        80        90       100       110      

          130       140       150       160       170       180    
pF1KB8 RPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEV
        : ::   .. ::.:.:::::.:..:. .:.::.:. ::: :::  :::.:.:.:::.: 
NP_115 PPPGP--AAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEE
        120         130       140       150       160       170    

          190       200       210                                  
pF1KB8 ERAILEMKWKVRAEKEACQREKELPAAVHPFHFV                          
       :::  . . ...::.:: :                                         
NP_115 ERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
          180       190       200       210       220       230    

>>NP_001316493 (OMIM: 615250) zinc finger BED domain-con  (234 aa)
 initn: 837 init1: 327 opt: 588  Z-score: 585.5  bits: 115.6 E(85289): 7.1e-26
Smith-Waterman score: 588; 52.7% identity (78.1% similar) in 169 aa overlap (37-203:27-193)

         10        20        30        40        50         60     
pF1KB8 EEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNK-GTRFSEAWEYFHLAP
                                     : ..  ::: : .. :. .:::: ::::::
NP_001     MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAP
                   10        20        30        40        50      

          70        80        90       100       110       120     
pF1KB8 ARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQD-P
       .: ::  ...:::::::.::.:::: ..::.:::.::.: ::.:::.:: :..      :
NP_001 GRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCP
         60        70        80        90       100       110      

          130       140       150       160       170       180    
pF1KB8 RPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEV
        : ::   .. ::.:.:::::.:..:. .:.::.:. ::: :::  :::.:.:.:::.: 
NP_001 PPPGP--AAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEE
        120         130       140       150       160       170    

          190       200       210                                  
pF1KB8 ERAILEMKWKVRAEKEACQREKELPAAVHPFHFV                          
       :::  . . ...::.:: :                                         
NP_001 ERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
          180       190       200       210       220       230    




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:23:54 2016 done: Fri Nov  4 15:23:55 2016
 Total Scan time:  6.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]