FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8764, 218 aa
  1>>>pF1KB8764 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2561+/-0.000695; mu= 11.0413+/- 0.042
 mean_var=103.3127+/-20.787, 0's: 0 Z-trim(113.3): 14  B-trim: 183 in 1/52
 Lambda= 0.126182
 statistics sampled from 13971 (13980) to 13971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS2960.2 ZBED2 gene_id:79413|Hs108|chr3          ( 218) 1510 284.3   4e-77
CCDS4036.1 ZBED3 gene_id:84327|Hs108|chr5          ( 234)  588 116.5 1.4e-26


>>CCDS2960.2 ZBED2 gene_id:79413|Hs108|chr3               (218 aa)
 initn: 1510 init1: 1510 opt: 1510  Z-score: 1498.2  bits: 284.3 E(32554): 4e-77
Smith-Waterman score: 1510; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB8 MMRREDEEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNKGTRFSEAWEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MMRREDEEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNKGTRFSEAWEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 FHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RQDPRPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 RQDPRPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERA
              130       140       150       160       170       180

              190       200       210        
pF1KB8 LEEVERAILEMKWKVRAEKEACQREKELPAAVHPFHFV
       ::::::::::::::::::::::::::::::::::::::
CCDS29 LEEVERAILEMKWKVRAEKEACQREKELPAAVHPFHFV
              190       200       210        

>>CCDS4036.1 ZBED3 gene_id:84327|Hs108|chr5               (234 aa)
 initn: 837 init1: 327 opt: 588  Z-score: 590.6  bits: 116.5 E(32554): 1.4e-26
Smith-Waterman score: 588; 52.7% identity (78.1% similar) in 169 aa overlap (37-203:27-193)

         10        20        30        40        50         60     
pF1KB8 EEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNK-GTRFSEAWEYFHLAP
                                     : ..  ::: : .. :. .:::: ::::::
CCDS40     MRSGEPACTMDQARGLDDAAARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAP
                   10        20        30        40        50      

          70        80        90       100       110       120     
pF1KB8 ARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQD-P
       .: ::  ...:::::::.::.:::: ..::.:::.::.: ::.:::.:: :..      :
CCDS40 GRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESSGAGSSPPAAPCP
         60        70        80        90       100       110      

          130       140       150       160       170       180    
pF1KB8 RPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEV
        : ::   .. ::.:.:::::.:..:. .:.::.:. ::: :::  :::.:.:.:::.: 
CCDS40 PPPGP--AAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGERALERRRRALQEE
        120         130       140       150       160       170    

          190       200       210                                  
pF1KB8 ERAILEMKWKVRAEKEACQREKELPAAVHPFHFV                          
       :::  . . ...::.:: :                                         
CCDS40 ERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKDDPEGDRDGCVITKVLL
          180       190       200       210       220       230    




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:23:53 2016 done: Fri Nov  4 15:23:54 2016
 Total Scan time:  2.380 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]